1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agatgctctggtagctacacaagatatgagttatgtgttattcttttctgtataatttttcctccactttaaatttgtttctctactttttgacttgtagGGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAGAGAG
species | Glycine max |
transcript | GLYMA19G36700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGAAGAACTGAAGTCGCAGTTAAACAACTTAGTAAAAGAGGAATGCAG GGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCATEST: gi|254331950|gb|GR843693.1|GR843693
genomic: CCAGAAGAACTGAAGTCGCAGTTAAACAACTTAGTAAAAGAGGAATGCAGgtaagagttt ... tgacttgtagGGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCAT
EST: CCAGAAGAACTGAAGTCGCAGTTAAACAACTTAGTAAAAGAGGAATGCAG GGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCAT
genomic: CCAGAAGAACTGAAGTCGCAGTTAAACAACTTAGTAAAAGAGGAATGCAGgtaagagttt ... tgacttgtagGGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCAT
ttctgtataatttttcctccactttaaatttgtttctctactttttgacttgtagGGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAGAGAG
ttttgac putative branch site (score: 3)
tttgtttctctacttt CT-rich tract
actttaaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agatgctctggtagctacacaagatatgagttatgtgttattcttttctgtataatttttcctccactttaaatttgtttctctactttttgacttgtagGGCCATAGGGAATGGGTAACAGAAGTGAATGTTCTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-gatgctc
- - - - - - - ctacaca
- - - - - - - - - - - - - - - -tatgtgt
- - - - - - - - - - - - - - - - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc