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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaatttttgttttctgtgctattttttcttgtcctacttctttgtctaatttcttatataaaaaaatcaaattcaaattggacaaaaatatgttaaattttttttttttctggggcatgcagCCATGTACGGTGTGATCATGGAATCAAGCAAACCAAACACTCAAAGAAGAACAAATCTAGGATTGCATGTTGTTCAACACACAAAGGTGTCACAGAAAGC

Basic information

species Glycine max
transcript GLYMA19G36690.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192334137|gb|FK026518.1|FK026518
EST:     TACAAAAATTGAAGATCTTGGGACTTCCAGGCAACAAAAGGAAACCAAAA                         CCATGTACGGTGTGATCATGGAATCAAGCAAACCAAACACTCAAAGAAGAA
genomic: TACAAAAATTGAAGATCTTGGGACTTCCAGGCAACAAAAGGAAACCAAAAgtaacaattt ... gggcatgcagCCATGTACGGTGTGATCATGGAATCAAGCAAACCAAACACTCAAAGAAGAA
EST: gi|192334136|gb|FK026517.1|FK026517
EST:     TACAAAAATTGAAGATCTTGGGACTTCCAGGCAACAAAAGGAAACCAAAA                         CCATGTACGGTGTGATCATGGAATCAAGCAAACCAAACACTCAAAGAAGAA
genomic: TACAAAAATTGAAGATCTTGGGACTTCCAGGCAACAAAAGGAAACCAAAAgtaacaattt ... gggcatgcagCCATGTACGGTGTGATCATGGAATCAAGCAAACCAAACACTCAAAGAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaattcaaattggacaaaaatatgttaaattttttttttttctggggcatgcagCCATGTACGGTGTGATCATGGAATCAAGCAAACCAAACACTCAAAGAAGAACAAATCTAGGATTGCATGTTGTTCAACACACAAAGGTGTCACAGAAAGC
                              ttttttttttttctgg  CT-rich tract
     tcaaattggacaaaaa  TA-rich tract