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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACAACGGAACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGgtaactaactaactctactctactctactacactgcgtattcgtattcgtattgtatgtagtagtatttgctacgtacacgtacggctttcgttcttttc...

Basic information

species Glycine max
transcript GLYMA19G36620.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120530428|gb|EH258561.1|EH258561
EST:     TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAG                         GTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT
genomic: TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGgtaactaact ... tccttttcagGTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT
EST: gi|209712813|gb|BW681669.1|BW681669
EST:     TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAG                         GTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT
genomic: TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGgtaactaact ... tccttttcagGTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT
EST: gi|213610256|gb|DB958825.1|DB958825
EST:     TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAG                         GTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT
genomic: TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGgtaactaact ... tccttttcagGTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT
EST: gi|213608709|gb|DB962859.1|DB962859
EST:     TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAN                         GTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT
genomic: TCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGgtaactaact ... tccttttcagGTTTTTAAACGCAGGAATATTTGGAAATGGAACCGAATCAAGCCACACCCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGAACAACGGAACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACGTCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGgtaactaactaactctactctactctactacactgcgtattcgtattcgtattgtatgtagtagtatttgctacgtacacgtacggctttcgttcttttc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC