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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCAAACTTTTGCATCCGAATCCCCGTTTGTTTTGGCAGAAGCCATGGCCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttacaaattcaaatgcaagcatttgatgttaccatcgttttttacttagatctgatcttaatcgattcctgcacgatgttcctccttccacgtt...

Basic information

species Glycine max
transcript GLYMA19G36350.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395598|gb|EV265475.1|EV265475
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|208244105|gb|GE039364.1|GE039364
EST:     CCGATGACCTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|207791307|gb|GD760946.1|GD760946
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|193426137|gb|FK390410.1|FK390410
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATAGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAAT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAAT-GTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAAT
EST: gi|23052821|gb|BU577312.1|BU577312
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|192326502|gb|FK018809.1|FK018809
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|11412772|gb|BF424783.1|BF424783
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|193341257|gb|FK306441.1|FK306441
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAAAT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAA-T
EST: gi|4405687|gb|AI507836.1|AI507836
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|5688202|gb|AI941217.1|AI941217
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|27446165|gb|CA953288.1|CA953288
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|298171349|gb|HO016381.1|HO016381
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCACGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
EST: gi|254339182|gb|GR847899.1|GR847899
EST:     CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTG                         GGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT
genomic: CCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttac ... ttatactcagGGAAATGTGATCAAGGATTCTGGATCCAAAGCGTTCAATCCGGGTTTAATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGCAAACTTTTGCATCCGAATCCCCGTTTGTTTTGGCAGAAGCCATGGCCGATGACTTCGACTTCGCAGATAAAGTTCCTCCTTCGTTCGATCGCGTGgtacacttacaaattcaaatgcaagcatttgatgttaccatcgttttttacttagatctgatcttaatcgattcctgcacgatgttcctccttccacgtt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcctcc