1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcctcccatcagtcccatgggcccattttgtaacccctcccctctctcacacacacacaaataaaataaaaatctgcaataactttgtactgccattagATGAAGGTCCCACCTGCTTCTAAGAATCCAAGTGCTGGCATGCAAGGATTTGGGAAAATGACGAAGAAGAATAATCCTATTTTCCCCCAAATTCCACAG
species | Glycine max |
transcript | GLYMA19G36240.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTCGAAAAAAGGTTGGCATGGTTTCTTGCAATAAG ATGAAGGTCCCACCTGCTTCTAAGAATCCAAG
genomic: CTTCGAAAAA-GGTTGGCATGGTTTCTTGCAATAAGgtaaattgca ... ctgccattagATGAAGGTCCCACCTGCTTCTAAGAATCCAAG
tctcacacacacacaaataaaataaaaatctgcaataactttgtactgccattagATGAAGGTCCCACCTGCTTCTAAGAATCCAAGTGCTGGCATGCAAGGATTTGGGAAAATGACGAAGAAGAATAATCCTATTTTCCCCCAAATTCCACAG
caataac putative branch site (score: 2)
aaataaaataaaaatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctcccatcagtcccatgggcccattttgtaacccctcccctctctcacacacacacaaataaaataaaaatctgcaataactttgtactgccattagATGAAGGTCCCACCTGCTTCTAAGAATCCAAGTGCTGGCATGCAAGGATTTGGGAAAATGACGAAGAAGAATAATCCTATTTTCCCCCAAATTCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- cctccca
- - - - - cagtccc
- - - - - - - - - - - - - - - - -acccctc
- - - - - - - - - - - - - - - - - - - - - - - - -acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atctgca