Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298165796|gb|HO008767.1|HO008767EST: TTGTGGCAAAGAAGGAGAAGCTTGATAAGAAGCGCAACATTGTCTCCAAG GAGGAGGCTTCTGCTATCAAGTCTGCTGGAAAATCGTGG
genomic: TTGTGGCAAAGAAGGAGAAGCTTGATAAGAAGCGCAACATTGTCTCCAAGgttagttact ... cctttgttagGAGGAGGCTTCTGCTATCAAGTCTGCTGGAAAATCGTGG
EST:
gi|57576094|gb|CX549065.1|CX549065EST: TTGTGGCAAAGAAGGAGAAGCTTGATAAGAAGCGCAACATTGTCTCCAAG GAGGAGGCTTCTGCTATCAAGTCTGCTGGAAAATCGTGGTATCAAACTATG
genomic: TTGTGGCAAAGAAGGAGAAGCTTGATAAGAAGCGCAACATTGTCTCCAAGgttagttact ... cctttgttagGAGGAGGCTTCTGCTATCAAGTCTGCTGGAAAATCGTGGTATCAAACTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTATGCCAAGACCGCTAAGAGAATGGCTCTTCTCGCTGAGAAGCAGCGCATTGTGGCAAAGAAGGAGAAGCTTGATAAGAAGCGCAACATTGTCTCCAAGgttagttacttttatcatttaccaaattatcttcattttcgcgtgttatgtgagtttgtgtatgtttggatttacttcattttaatttgtgtatttagttcattgatgttggtttgaactgacactggtggttctattcctttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC