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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGgtaattgtgctgccctcaaatatcattgtcacgtatacacacacacacccaaagaaagaaaggaaaaaattccagaacaaagatatgcacatgcttatct...

Basic information

species Glycine max
transcript GLYMA19G36140.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36140.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g17634.1 (Oryza sativa), 5'ss of exon 4
TAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGgtaat---tgtgctgccctcaaatatcattgtcacgtatacacacacacacccaaagaaagaaaggaaaaaattccagaacaaagatatgcacatgcttatct--
|  | | ||||| ||||||||| | ||||| |||||||| || |||||||||||| |||||    | |||||||  ||     | ||  |  | ||||| |||||   | | || || ||   | ||||||||    |||   |  |      |     |       | |  || ||   |||  ||     | |   ||     
TGCTGATAAGATTACTCCAAATGTCTATGTCTTCAACAGCCTTATGAATGTGAATGCCCATAGCTTCAGCTACAACTTTTCAGTCTACAAGCACATGCAAgtaatgcattttctaccttct--tctcattgtc---cataggtaggccattttagctttaagcgattacatgttgcattgcaataatcattccttttctactaca

upper sequence: GLYMA19G36140.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G02830.1 (Arabidopsis thaliana), 5'ss of exon 4
TAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGgtaa-----ttgtgctgcc-ctcaaatatcattgtcacgtatacacacacacacccaaaga---aagaaaggaaaaaattccagaacaaagatatgcacatgcttatct-
 ||  |||| || |  |||||||| |||||  | |||||||| |||||||| ||||||||||||||| | |||||  ||||  ||||  | ||||||||||||      || | ||| | ||  ||||  | | |      |    | | |       |||   | ||  ||          |     ||  | | ||  |  |   |  
CAAAGAAAACATTAAGCCAAATATTTATGTTATTAACAGTCTAATGAATGTTAATTCCCATGATCTTGGGTACACACTAAAAGTATACAAGAATATGCAGgtatgttctttcttctgtctcttgaatacaagtatttgaattgtctagagagtattttagatttaggagtgggtgtggactgaccttgaaactctacatgtcatgggcag

upper sequence: GLYMA19G36140.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0040g03240.t01 (Vitis vinifera), 5'ss of exon 4
TAATCAAAAGATCACTCCAAATATATATGTGTTCAACAGTCTCATGAATGTGAATTCCCATGATCTTAGCTACACGTTAAATCTATATCAAAATATGCAGgtaattgtgctgccctcaaatatcattgtcacgtatacacacac---acacccaaagaaagaaaggaaaaaattccagaacaaagatatgcacatgcttatct-
|  ||| |||||||| |||||||| || || ||||||||||||||||||||||||  ||||||| | || ||||| || ||| | ||  | |||||||| |||| | |    | |||   | ||  | ||||  |  |||  ||   |||| ||     ||       | | ||| || ||| || ||   |       |||| 
TGCTCAGAAGATCACCCCAAATATTTACGTTTTCAACAGTCTCATGAATGTGAATGTCCATGATTTGAGTTACACATTCAATGTCTACAAGAATATGCAAgtaactctctctctctc---tctctctctcacccactcactaactatacacacatgtttagctcctttatatttctagtacagag-tagctattcttgaatctg