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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgctttgcagataaccttatgcttgttctaattttagtaatctatccatcttatatcagcactttgacatgaccttgttatctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAT

Basic information

species Glycine max
transcript GLYMA19G36130.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G36130.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv08s0040g03130.t01 (Vitis vinifera), 3'ss of exon 5
-----gtgctttgcagataacctt---atgctt-gttctaattttagtaatctatccatcttatatcagcactttgacat-gaccttgttatctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAT
      | | ||           |   |||  | |||   |   ||||  | | |   || | | |     ||  |  || ||   |||| |   ||  |||| | || ||||| || |  ||||| |||||||| |   |    ||||||||||||||||||| ||||||||| ||| | 
atttcttaccttttgatctcttctgaaatgtatagtttctacaatagttttgtgtttctcct-tgttgctgctaggtaatagaatctgttgttggtttcagAAGTGTACGCAGATCCTAGCCACTCGTCATATGAAGTACTGGGATTTGTTTCTGGAGTTTTAAGCACATTTACTCCCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9258245|gb|BE346392.1|BE346392
EST:     GCCAAATCCTTTGCTGAGAAGT-AAAATTTGA-GGAG                         AA-TCTATGCAGACCCCACTCACTCATCATATGAAGCCTTAAATTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTT
EST: gi|120495842|gb|EH224009.1|EH224009
EST:     TTTGCTGAAGAAGTCCAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: TTTGCTG-AGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|151403056|gb|EV272866.1|EV272866
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|192297273|gb|FG990621.1|FG990621
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|15202597|gb|BI425484.1|BI425484
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCA
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCA
EST: gi|15284825|gb|BI468716.1|BI468716
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAAGCCTTAAATTTTGGTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|120496088|gb|EH224255.1|EH224255
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|9902843|gb|BE611811.1|BE611811
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|27425152|gb|CA936672.1|CA936672
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|117557702|gb|EG702087.1|EG702087
EST:     GCCAAATCCTTTGCTGAGGAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|120495642|gb|EH223809.1|EH223809
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
EST: gi|31473394|gb|CD415407.1|CD415407
EST:     GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAG                         AAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT
genomic: GCCAAATCCTTTGCTGAGAAGTCAAAATTTGAAGGAGgtgctttgca ... tctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaatctatccatcttatatcagcactttgacatgaccttgttatctcttctagAAATCTATGCAGACCCCACTCACTCATCATATGAGGCCTTAAATTTTGTTTCTGGAGTTTTAACCACATTTACCCCCAAT
                          ctttgac  putative branch site (score: 4)
                                     ccttgttatctcttct  putative PPT
            atcttatat  TA-rich tract