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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCAGTGCTTGCATGTGAGGAGCAAGAGGCAGTGTAGTTTGCAAATCCCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtcttgagatattactctcgtttccctgattcatttcactgcactcaaatttagtttacttcttctatttaaaaaatcagagagatagtgagac...

Basic information

species Glycine max
transcript GLYMA19G36020.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192329260|gb|FK020179.1|FK020179
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
EST: gi|298177467|gb|HO023600.1|HO023600
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
EST: gi|192295925|gb|FG992676.1|FG992676
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
EST: gi|298163896|gb|HO013541.1|HO013541
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
EST: gi|192321859|gb|FK013671.1|FK013671
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
EST: gi|151404097|gb|EV273907.1|EV273907
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
EST: gi|192321371|gb|FK012132.1|FK012132
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
EST: gi|58025322|gb|CX712063.1|CX712063
EST:     CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTTTCAG                         GTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC
genomic: CCATTCGGATTACCAAAACGACACACCAGGAGGTCGTTTTTCATTCTCAGgttcgtgtct ... ttttctgtagGTTTTCATAACAAATTTTTGAAATGGAAGATAAAGGAATTAAGCAGGAGTC