1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atcattgaagaacactattatttgtttaattcgcagagaagggatctcttggtggcctttttcttagttaattacgcaattttagttgtctattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGACACTTGTCTTCGAGGACTCGTTCCCGTGATCTGG
species | Glycine max |
transcript | GLYMA19G35980.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|193520548|gb|FK475109.1|FK475109
genomic: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
EST: CACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|209715287|gb|BW654174.1|BW654174
genomic: CACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
EST: CCACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|213599416|gb|DB970364.1|DB970364
genomic: CCACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
EST: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCEST: gi|298181985|gb|HO026160.1|HO026160
genomic: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
EST: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAG AGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
genomic: ACCTGAAAGGGTTAGGTTTCGGGAGAAAAAGCAATCCACTCAGAGgtaactcttc ... tattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACC
ctcttggtggcctttttcttagttaattacgcaattttagttgtctattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGACACTTGTCTTCGAGGACTCGTTCCCGTGATCTGG
agttaat putative branch site (score: 4)
tctatttt putative PPT
tttttcttagttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcattgaagaacactattatttgtttaattcgcagagaagggatctcttggtggcctttttcttagttaattacgcaattttagttgtctattttgcagAGCTAGAAGAATTCAACAATGCCTCGCTATGATGATAAATACGGCAATACCCGCCTCTATGTGGGACACTTGTCTTCGAGGACTCGTTCCCGTGATCTGG
- - - gaagaac
- - - - - - - - - - - - - - - - - - - - - - - - ttggtgg