1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactgacgatgttaatctgtctggttcaag
species | Glycine max |
transcript | GLYMA19G35980.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|15286621|gb|BI470512.1|BI470512
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG -----G-CGAGGACGGAGTTATTCACGCTCACCAGTCAAGTCACGTTCACCEST: gi|193466263|gb|FK434232.1|FK434232
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|193432066|gb|FK395642.1|FK395642
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCTCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|193566278|gb|FK524081.1|FK524081
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGTAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACEST: gi|208025699|gb|GD822039.1|GD822039
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTG-AGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|213599416|gb|DB970364.1|DB970364
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCNNNNNNNTTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACEST: gi|193383972|gb|FK351377.1|FK351377
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAA-TTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|209715287|gb|BW654174.1|BW654174
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|208138940|gb|GD938560.1|GD938560
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|193446331|gb|FK411322.1|FK411322
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCC-AAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|193546062|gb|FK502281.1|FK502281
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|298181985|gb|HO026160.1|HO026160
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|208053003|gb|GD850998.1|GD850998
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCEST: gi|193678163|gb|FK617055.1|FK617055
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactgacgatgttaatctgtctggttcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC