Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactgacgatgttaatctgtctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGCGGCAGAAGCCGTGATCGCAGTTACAGCCGAGATCGCAGCTAC

Basic information

species Glycine max
transcript GLYMA19G35980.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193641398|gb|FK589004.1|FK589004
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208159269|gb|GD957902.1|GD957902
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193566278|gb|FK524081.1|FK524081
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGTAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTG-AGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
EST: gi|208185972|gb|GD986741.1|GD986741
EST:     CCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: CCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193705108|gb|FK641910.1|FK641910
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208322910|gb|GE123917.1|GE123917
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193696496|gb|FK640214.1|FK640214
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208277020|gb|GE080775.1|GE080775
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|207833321|gb|GD804452.1|GD804452
EST:     GAGAGAGGACATATAGGAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208221860|gb|GE016882.1|GE016882
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208055877|gb|GD851974.1|GD851974
EST:     AACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: AACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208316914|gb|GE111425.1|GE111425
EST:     GAGAGAAGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208053003|gb|GD850998.1|GD850998
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208283428|gb|GE087238.1|GE087238
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|15286621|gb|BI470512.1|BI470512
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         -----G-CGAGGACGGAGTTATTCACGCTCACCAGTCAAGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|209715287|gb|BW654174.1|BW654174
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208068510|gb|GD862356.1|GD862356
EST:     CCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: CCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193539027|gb|FK496863.1|FK496863
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTAGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATT-GAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
EST: gi|193732461|gb|FK668451.1|FK668451
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCC-AAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193663378|gb|FK604082.1|FK604082
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193667471|gb|FK608099.1|FK608099
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193432066|gb|FK395642.1|FK395642
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCTCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193558164|gb|FK514101.1|FK514101
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTAGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATT-GAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
EST: gi|208132771|gb|GD931236.1|GD931236
EST:     GAGAGGACATATAAGAAAGGAACTGCAAGAACACGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGGACATAT-AGAAAGGAACTGCAAGAACA-GCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208041976|gb|GD841382.1|GD841382
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193654538|gb|FK597848.1|FK597848
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193432628|gb|FK398276.1|FK398276
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGCTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193401560|gb|FK368025.1|FK368025
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193725856|gb|FK660178.1|FK660178
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193466263|gb|FK434232.1|FK434232
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208070924|gb|GD871349.1|GD871349
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193679598|gb|FK621096.1|FK621096
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193529404|gb|FK484805.1|FK484805
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208025699|gb|GD822039.1|GD822039
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|213599416|gb|DB970364.1|DB970364
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCNNNNNNNTTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAA-TTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
EST: gi|17023537|gb|BM094571.1|BM094571
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193383972|gb|FK351377.1|FK351377
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193359746|gb|FK324152.1|FK324152
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193578511|gb|FK535225.1|FK535225
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTAGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATT-GAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCAC
EST: gi|207762924|gb|GD733869.1|GD733869
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208129713|gb|GD928957.1|GD928957
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208263758|gb|GE062926.1|GE062926
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193546062|gb|FK502281.1|FK502281
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193464437|gb|FK429663.1|FK429663
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193446331|gb|FK411322.1|FK411322
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCC-AAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208297757|gb|GE094512.1|GE094512
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193401708|gb|FK366381.1|FK366381
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCAACGTTCAC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCA-CGTTCAC
EST: gi|193417901|gb|FK383411.1|FK383411
EST:     CCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: CCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193640008|gb|FK590573.1|FK590573
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193361097|gb|FK323893.1|FK323893
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193398512|gb|FK362124.1|FK362124
EST:     GAGAGGACATATAGAAAGGAACTAGACAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGGACATATAGAAAGGAACT-G-CAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193690394|gb|FK629273.1|FK629273
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|151410994|gb|EV280809.1|EV280809
EST:     GGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|192302690|gb|FG993710.1|FG993710
EST:     AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCNNNNNNNTTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: AGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCC-AAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|207699354|gb|GD679814.1|GD679814
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|193678163|gb|FK617055.1|FK617055
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|298181985|gb|HO026160.1|HO026160
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208138940|gb|GD938560.1|GD938560
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC
EST: gi|208061227|gb|GD860411.1|GD860411
EST:     GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAG                         CACCAGGCGAGGACGGAGTTATTCACGCTCNCCAGTCAGGTCACGTTCACC
genomic: GAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgttgtg ... ctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgaatggggtctctgagatctaaactgacgatgttaatctgtctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGCGGCAGAAGCCGTGATCGCAGTTACAGCCGAGATCGCAGCTAC
                                        tctgtct  CT-rich tract
                                 atgttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgttgtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactgacgatgttaatctgtctggttcaagCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGCGGCAGAAGCCGTGATCGCAGTTACAGCCGAGATCGCAGCTAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT