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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAAGCATTTTTGATGCAAAGGCTGGAATTTCATTGAACAACAACTTTGTGAAACTTGTCTCTTGGTATGACAATGAGTGGGGCTACAGgtaaaacaaacttctatgcctttttattttattttcactaagtgattagtctttttcttttttgtcagtctataggcaacaagaagcaaaaacacactca...

Basic information

species Glycine max
transcript GLYMA19G22780.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G22780.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os04g40950.1 (Oryza sativa), 5'ss of exon 11
GTCAAGCATTTTTGATGCAAAGGCTGGAATTTCATTGAACAACAACTTTGTGAAACTTGTCTCTTGGTATGACAATGAGTGGGGCTACAGgtaaaacaaacttctatgcctttttattttattttcactaagtgattagtctttttcttttttgtcagtctataggcaa-----caagaagcaaaaacacactca
||||||||| |||||||||||||| || ||| |  | ||  |||||||||| || ||||| |||||||||||||| || ||||| |||||||||  ||    | | ||| ||   |   |||  |   |   |  ||  |  || | |  ||  | |     ||||| |     | |  || |||   | |||  
GTCAAGCATCTTTGATGCAAAGGCCGGTATTGCTCTCAATGACAACTTTGTTAAGCTTGTGTCTTGGTATGACAACGAATGGGGATACAGgtaat-catttctatgtgcattagaaagctatacttgttttttagttcatggttgtttggttcat-atcgcgtaggctagctctccattag-aaagctatact--

upper sequence: GLYMA19G22780.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G071630_T01 (Zea mays), 5'ss of exon 11
GTCAAGCATTTTTGATGCAAAGGCTGGAATTTCATTGAACAACAACTTTGTGAAACTTGTCTCTTGGTATGACAATGAGTGGGGCTACAGgtaaaacaaacttctatgcctttttattttattttcactaagtgattagtctttttcttttttgtcagtctataggcaacaagaagcaaaaacacactca
||| ||||| |||||||| |||||||| ||| | ||||||  |||||||||||| ||||| || ||||| ||||| |||||||| ||||||| |    |  | |     |   | || | | ||| |   || | ||        |    ||| | | ||  | |   |      |        ||    
GTCTAGCATCTTTGATGCGAAGGCTGGCATTGCCTTGAACGGCAACTTTGTGAAGCTTGTGTCCTGGTACGACAACGAGTGGGGATACAGgttagt--agttgcctctacagatcatctgactttgaactagggcttgtgtgcacttcaatttctaaatcc-tggtttattttccgtttcttttcag---

upper sequence: GLYMA19G22780.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S49_34V6.1 (Physcomitrella patens), 5'ss of exon 5
----------GTCAAGCATTTTTGATGCAAAGGCTGGAATTTCATTGAACAACAACTTTGTGAAACTTGTCTCTTGGTATGACAATGAGTGGGGCTACAGgtaaaacaaacttctatgcctttttattttattttcactaagtgattagtctttttcttttttgtcagtctatagg-caacaagaagcaaaaacacactca----------------------------------
          |||  |||| || ||||| || |||||  |  |  ||  | |||| |||||||| || ||| | ||||||||||| |||||||||||||||||  |   |  ||    |   |  | | |   |   ||||   | | |  |    |  | |   ||| || | |  ||     | |    | | |||||                                   
GTGACAGCCGGTCCGGCATCTTCGATGCTAAAGCTGGGTTCGCCATGGCCGACAATTTTGTGAAGCTCGTCGCGTGGTATGACAACGAGTGGGGCTACAGgtatcatccatctcc---cacctccactcttcctcttctaa---aatcgcttcgcgccatgtctccagcctcttgaacattgcaatgtttcagctcactctgacgttgtttcctttgtttggatatgtgctgcag

upper sequence: GLYMA19G22780.1 (Glycine max), 5'ss of exon 10
lower sequence: PP1S178_97V6.1 (Physcomitrella patens), 5'ss of exon 5
----------GTCAAGCATTTTTGATGCAAAGGCTGGAATTTCATTGAACAACAACTTTGTGAAACTTGTCTCTTGGTATGACAATGAGTGGGGCTACAGgta-------aaacaaacttctatgcctttttattttattttcactaagtgattagtctttttcttttttgtcagtct-ataggcaacaagaagcaaaaacacactca----------------------------------------------------------
           || || ||||||||||| ||||| ||| |||| |||| | |||| || ||||| |||||  | ||||| |||||||||||||||||||||||       ||||    ||||  |  |    |   |  ||||   ||  ||||       |       | | ||||| ||  | ||       ||   |   |   |                                                          
GCGACACCCGATCCAGTATTTTTGATGCCAAGGCAGGATTTTCCTTGAGCGACAAATTGGTGAAGCTTGTAGCGTGGTACGACAATGAGTGGGGCTACAGgtaccatcctaaactctgttcttagagtccgaaccatcgtttccaaaaccgatttcaaccctctcacaatcttagtctcatctgaaatcctcgtcagcgatgtatggagtgttgtacttcacgttatccatttcaaaagacttaccatattttttcaaatttgcag