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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcactatgttttgcttgtattggttaaagttactttttacagtgaacatccatctaatttatttgtatctgtgatagCCTTCTCAAAGAAACGCATCTCTGTGAGCTCCCTCCTGGCTGTTGGTGCTGTTCATCAGCATCTAGTTAAAACTCTTGAGCGCACTAGGGTTGCCTTGAT

Basic information

species Glycine max
transcript GLYMA19G16450.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G16450.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 13
------------------------------------------------------------------------------------------gtattgcactatgttttgcttgtatt--ggttaaagttactttttacagtgaacatccatctaatttatttgtatc-tgtgatagCCTTCTCAAAGAAACGCATCTCTGTGAGCTCCCTCCTGGCTGTTGGTGCTGTTCATCAGCATCTAGTTAAAACTCTTGAGCGCACTAGGGTTGCCTTGAT
                                                                                           || |      ||||||   | | ||  | ||   |    ||| ||   | |||     |||   | |||  | |  | |   ||| ||||||   || ||  |  |||||||||||||  |||| ||||||||||| ||||||||||| ||| |||  ||||||||||||  |||||  |||||
gtaccacgaattgtaaactgccttgcactgaaaaatcccctatcaaataatatgtactcagaaatatatttcactttttgctgggtgtatatacttttgggtgttttaactattttctgtttgctgggtttttctatttttaactaatctctttatcattcatcttattttgcagCGTTCTCATCAAAGCGTGTAGCTGTGAGCTCCCTATTGGCCGTTGGTGCTGTGCATCAGCATCTGGTTCAAAAGCTTGAGCGCACTCAGGTTGGGTTGAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaaagttactttttacagtgaacatccatctaatttatttgtatctgtgatagCCTTCTCAAAGAAACGCATCTCTGTGAGCTCCCTCCTGGCTGTTGGTGCTGTTCATCAGCATCTAGTTAAAACTCTTGAGCGCACTAGGGTTGCCTTGAT
                             atctaat  putative branch site (score: 3)
                             atctaatttatttgta  TA-rich tract