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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaatcccatacatatttagtatgtgctttcttggaatgagtcctaagaaaccctcaactagctgacactgacagactttacttgattatatatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGG

Basic information

species Glycine max
transcript GLYMA19G15780.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192303715|gb|FG998669.1|FG998669
EST:     CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCGG                      
genomic: CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAAT----Ggcaggtactc ... atatatt
EST: gi|16347942|gb|BI973537.1|BI973537
EST:     CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATG                         GCAGGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGG
genomic: CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGgcaggtactc ... atatattcagG-A--A-TTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGG
EST: gi|51336038|gb|CO979904.1|CO979904
EST:     CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAG                      
genomic: CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAAT----Ggcaggtactc ... atatatt
EST: gi|9204224|gb|BE330448.1|BE330448
EST:     CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATG                         GCAGGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGG
genomic: CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGgcaggtactc ... atatattcagG-A--A-TTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGG
EST: gi|51345312|gb|CO986045.1|CO986045
EST:     CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGGCAG                      
genomic: CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAAT----Ggcaggtactc ... atatatt
EST: gi|298170162|gb|HO018786.1|HO018786
EST:     CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATG                         GCAGGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGG
genomic: CAAACCCCTCCTGATGGCAATCAAAGGCCAGATCTATGACGTGTCCAATGgcaggtactc ... atatattcagG-A--A-TTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaaccctcaactagctgacactgacagactttacttgattatatatattcagGAATTTTTATGGTCCCGGAGGACCATATGCAATGTTTGCAGGAAAGGAATGTAGCAGAGCCCTTGCACTCCTGTCTTTTAAACCTGATGACATTAATGGG
                              actttacttgattata  TA-rich tract