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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAATCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGACCAATTTATCTTTGgtaagttcgtattattgtagtacattgtaaacttcattttttattttagttacataaaatcaaatgcttatctataattttatgaaggtaaaacacactaattgtctctgcag

Basic information

species Glycine max
transcript GLYMA19G13770.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G13770.1 (Glycine max), 5'ss of exon 3
lower sequence: Vv14s0066g00900.t01 (Vitis vinifera), 5'ss of exon 3
AAGAATCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGACCAATTTATCTTTGgtaagtt---cgtattattgtagtacattgtaaacttcattttttattttagttacataaaatcaaatgcttatctataattttatgaaggtaaaacacactaattgtctctgcag
|| || ||||| || || ||||| ||||||||||||||||||||||||||||| || ||||| ||  ||||||| | |||  | || || || || |||||||| ||   | |  |  | |  | ||||  | ||   |||||  || |  |  ||| ||||  |    | |   |||||||| |  ||   |||| |   |   | ||  |||||
AAAAACCTTGTGAAGCTTTTGGGATGTAGCATTGAAGGCCCTGAGAGCCTCCTGGTTTATGAATATGTACCCAACAGGAGCCTTGATCAGTTCATGTTTGgtaatttttccctccttatatgattcatt-catacagaattttggatctctg--acaaaaaacta---ccctgattataatttca--aactgaaaataacttctctctccatgcag