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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGTGGCGGTGGAGGAGGTTATCGTTGCTAATTGCGGTGATTCTAGGGCCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgtttccattttcttaattatttaatttctcaaatttctactctattttttatattccttggacagctcattttagaattgttattgttaatt...

Basic information

species Glycine max
transcript GLYMA19G11770.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208136115|gb|GD939200.1|GD939200
EST:     CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGG
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGG
EST: gi|193312987|gb|FK282372.1|FK282372
EST:     CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
EST: gi|207770241|gb|GD740973.1|GD740973
EST:     CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGG
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGG
EST: gi|193398149|gb|FK363385.1|FK363385
EST:     CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAAGGGT
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAA-GGGT
EST: gi|193396482|gb|FK362796.1|FK362796
EST:     CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAAGGGT
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAA-GGGT
EST: gi|193632398|gb|FK583760.1|FK583760
EST:     CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
EST: gi|193597911|gb|FK552383.1|FK552383
EST:     TTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
genomic: TTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
EST: gi|19270647|gb|BM886903.1|BM886903
EST:     CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAG                         CCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC
genomic: CCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgt ... gtgtgcacagCCCCACAGGCCCGATGAGTTGATGAGAATCGAAGAGGCTGGTGGAAGGGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCGTGGCGGTGGAGGAGGTTATCGTTGCTAATTGCGGTGATTCTAGGGCCGTGTTGGGAAGAGGAGGTGAGGCCGTGGACTTGTCTAGTGATCATAAGgtatatttgtttccattttcttaattatttaatttctcaaatttctactctattttttatattccttggacagctcattttagaattgttattgttaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG