Sequence
atgc intronic sequence ATGC exonic sequence...tgggagatatgatccaacataactttgtgagaattgaaaaagaaacgtgccacattcatttggagcatttgcatgatataatttttttttttcaagtcagAACTTGCAGTGTGGGGAGAATGTAACAATAGAAGGACAAGCTTATACTATTTCAGCTGTAACACATCGCTATCAGCTTCGGAAGGGGAAATACGAACCAA
Basic information
species | Glycine max |
transcript | GLYMA19G10170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G10170.1 (Glycine max), 3'ss of exon 2
lower sequence: Vv14s0066g00470.t01 (Vitis vinifera), 3'ss of exon 2
tgggagatatgatccaacataactttgtgagaattgaaaaagaaacg-----tgccacattcatttggagcatttgcatgatataatttttttttttcaagt-cagAACTTGCAGTGTGGGGAGAATGTAACAATAGAAGGACAAGCTTATACTATTTCAGCTGTAACACATCGCTATCAGCTTCGGAAGGGGAAATACGAACCAA
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------aggtcacctttttgaacttagtaacagctcaacatgatatagtaactggggtatttatgttgcttttgtgtctcttctcattgtacttgctctgttacagAATTTGCAATGTGGGGAGAGCGTGACCATTGAAGGTCAAGCTTATACCATCTCAGCTGTCACTCATCGATACCAACTCCGGAAGGGCAAGTATGAACCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208336274|gb|GE138671.1|GE138671EST: TCGAGATTACTCCTCCACCTAAGTCTCTTGGCGTTCGTTGCTTACCCCCT T
genomic: TCGAGATTACTCCTCCACCTAAGTCTCTTGGCGTTCGTTGCTTACCCCCTgtaagtgcca ... ttcaagtcag-
EST:
gi|208336274|gb|GE138671.1|GE138671EST: TCGAGATTACTCCTCCACCTAAGTCTCTTGGCGTTCGTTGCTTACCCCCT T
genomic: TCGAGATTACTCCTCCACCTAAGTCTCTTGGCGTTCGTTGCTTACCCCCTgtaagtgcca ... ttcaagtcag-
EST:
gi|208336274|gb|GE138671.1|GE138671EST: TCGAGATTACTCCTCCACCTAAGTCTCTTGGCGTTCGTTGCTTACCCCCT T
genomic: TCGAGATTACTCCTCCACCTAAGTCTCTTGGCGTTCGTTGCTTACCCCCTgtaagtgcca ... ttcaagtcag-
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgtgccacattcatttggagcatttgcatgatataatttttttttttcaagtcagAACTTGCAGTGTGGGGAGAATGTAACAATAGAAGGACAAGCTTATACTATTTCAGCTGTAACACATCGCTATCAGCTTCGGAAGGGGAAATACGAACCAA
taatttttttttttc CT-rich tract
atttgcatgatataat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgggagatatgatccaacataactttgtgagaattgaaaaagaaacgtgccacattcatttggagcatttgcatgatataatttttttttttcaagtcagAACTTGCAGTGTGGGGAGAATGTAACAATAGAAGGACAAGCTTATACTATTTCAGCTGTAACACATCGCTATCAGCTTCGGAAGGGGAAATACGAACCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - -ccaacat
- - - - - - - - - - - ctttgtg
- - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - -tgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgat