Sequence
atgc intronic sequence ATGC exonic sequencegttaatttcatcacattggtggaaacatatttaattttttttcattgcttaaatactgcattctaaactacattttcctatttgcagTTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTGTGGTCATTGGATAGGGACCCTTCACCTCTACCTCCATCAGACAATCAGT
Basic information
species | Glycine max |
transcript | GLYMA19G09050.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G09050.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0066g00410.t01 (Vitis vinifera), 3'ss of exon 5
gttaatttcatcacattggtggaaacatatttaattttttttcattgcttaaatactgcattctaaactacattttcctatt----tgcagTTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTGTGGTCATTGGATAGGGACCCTTCACCTCTACCTCCATCAGACAATCAGT
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gttggtt--atcaaggagactaccaaaaaacttcttccttttgacc-ttgagatcatgcattttcaacgatgtttgtctgtccaagtgcagTTTGGAAATTTCGGTTCACTGGAGCAACATGGATTTGCAAGGAACAGATTATGGTCATTAGATAGCAACCCTTCACCTTTGTCTCCATCTAACAGTCAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192328333|gb|FK020044.1|FK020044EST: GGAAACAGTCTAAAGCAAACAGAGGAGGTATATCAGTCTGCTTTCCACAG TTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTG
genomic: GGAAACAGTCTAAAGCAAACAGAGGAGGTATATCAGTCTGCTTTCCACAGgttaatttca ... ctatttgcagTTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttttttcattgcttaaatactgcattctaaactacattttcctatttgcagTTTGGAAATCTTGGTTCACTAGAACAACATGGGTCTGCAAGAAACAGATTGTGGTCATTGGATAGGGACCCTTCACCTCTACCTCCATCAGACAATCAGT
ttctaaa putative branch site (score: 2)
ttttcctattt putative PPT
tttttcatt TA-rich tract