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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatttcaagccgtgttttccttatttttattcatttccactgattacactgaagatgaaattctattgttggattctattaaattgtccaaatctaaaccatttttgttctgcttcttatttagTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGATCCCCCGAGTCAGAAACACGGATAATAAAACACTTTCTTTTACACTGTCA

Basic information

species Glycine max
transcript GLYMA19G09050.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G09050.2 (Glycine max), 3'ss of exon 5
lower sequence: Vv14s0066g00410.t01 (Vitis vinifera), 3'ss of exon 6
gtatgatttcaagccgtgttttccttatttttattcatttccactgattacactgaagatgaaattc-tattgttggattctattaaattgtccaaatctaaaccatttttgttctgct-tcttatttagTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGATCCCCCGAGTCAGAAACACGGATAATAAAACACTTTCTTTTACACTGTCA
                         |||  || | | ||         |   |   || | | | ||  || |  || |  ||| |   |||| | |||||    |||| |||       | || |  || |||||||| ||||| || || |||||||||| |||||||||||   |||||||||| || ||||| || ||||  ||  || | |||||||   |  | 
------------------------gtatgcttgtgcgttaatgtgatatttgcatcaggtaagagtcacatggaagggtgttatcac-ctgtctatatctatga-atttatgtatgatggttttctgcagATTTGAGTTGCGGCTCCGTATTTCTCTCAGTGATGGCAAGCTCACGATGATCCCCCGTGTGAGAAATACAGATAGCAAGCCATTCTCTTTTATGTTTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328333|gb|FK020044.1|FK020044
EST:     GATCTGATAATAAAGTCAACAGGAGTTGACTTGAAGAATAGGCCATGTAG                         TTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGAT
genomic: GATCTGATAATAAAGTCAACAGGAGTTGACTTGAAGAATAGGCCATGTAGgtatgatttc ... tcttatttagTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGAT
EST: gi|18732785|gb|BM527246.1|BM527246
EST:     GATCTGATAATAAAGTCAACAGGAGTTGACTTGAAGAATAGGCCATGTAG                         TTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGAT
genomic: GATCTGATAATAAAGTCAACAGGAGTTGACTTGAAGAATAGGCCATGTAGgtatgatttc ... tcttatttagTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggattctattaaattgtccaaatctaaaccatttttgttctgcttcttatttagTTTTGAGTTTCGGCTTCGAATCTCTCTCAGTGCTGGCAAGCTCATTTTGATCCCCCGAGTCAGAAACACGGATAATAAAACACTTTCTTTTACACTGTCA
                      atctaaa  putative branch site (score: 3)
                                tttttgttctgcttct  putative PPT
     tctattaaatt  TA-rich tract