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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgtgaatttctttttatgactatacctagctcactaaatttaataaatgaattctgatttgtttccttttttttttggaaaaactaaaaccattgcagGTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTACCCTGACAACAAGAAAGGGCTTACTTCTAAAAATTCCGAAGAAATCAACC

Basic information

species Glycine max
transcript GLYMA19G07750.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27425494|gb|CA937014.1|CA937014
EST:     GTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG                         GTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTAC
genomic: GTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTGgtatgtaatc ... accattgcagGTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTAC
EST: gi|19452728|gb|BM954138.1|BM954138
EST:     GTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTG                         GTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTAC
genomic: GTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTTTTTATATCCTTGgtatgtaatc ... accattgcagGTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaatgaattctgatttgtttccttttttttttggaaaaactaaaaccattgcagGTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTACCCTGACAACAAGAAAGGGCTTACTTCTAAAAATTCCGAAGAAATCAACC
                                      aactaaa  putative branch site (score: 2)
                       ttttttttttggaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgtgaatttctttttatgactatacctagctcactaaatttaataaatgaattctgatttgtttccttttttttttggaaaaactaaaaccattgcagGTATCCATATTCTATGATTCTATTTTAATGTGTCAACATTATGTAATGTACCCTGACAACAAGAAAGGGCTTACTTCTAAAAATTCCGAAGAAATCAACC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA