Sequence
atgc intronic sequence ATGC exonic sequencegtttgtgatttttacaagtaattatgaattagaccctgccatcagattttatccttgaatgtgtataattaatttcaactttatttaaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTGCTTATATCCTTG
Basic information
| species | Glycine max |
| transcript | GLYMA19G07740.2 |
| intron # | 6 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G07740.2 (Glycine max), 3'ss of exon 6
lower sequence: Vv14s0219g00130.t01 (Vitis vinifera), 3'ss of exon 6
gtttgtgatttttacaagtaattatgaattagaccctgccatcaga---ttttatccttgaatgtgtataattaatttcaactttatt----taaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTGCTTATATCCTTG
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gtgtgtcatctattcca----ctaccaaacagatgttggcatctgaaatttatgtactcacatctgtatgattatttatgaacttctcgtcgtttttccagGTTCTTGGGTGAACTTCTATGGAAACATAGGAAAGCTCTTGATATCTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151405395|gb|EV275209.1|EV275209EST: TGGAGGGATCTTTAACTATTCACAAATGGTTGTGCAGTCCATAGATCAAG GTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTGCTTATATCCTTG
genomic: TGGAGGGATCTTTAACTATTCACAAATGGTTGTGCAGTCCATAGATCAAGgtttgtgatt ... ttaaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTGCTTATATCCTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catcagattttatccttgaatgtgtataattaatttcaactttatttaaatctagGTTCCTGGGTGAACTTCTATGGAAACATTGGGAAAGTGCTTATATCCTTG
aattaat putative branch site (score: 3)
ctttattt putative PPT
ttgaatgtgtataatt TA-rich tract
