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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGttacctttttccttctttttgattttttcttttattctacttgttgctattattatctttacttgtttctattattacggtttttgttgtttcatgttcatggttatcatttatcaatctgcttcagtcttatatttttaatttctgtaga

Basic information

species Glycine max
transcript GLYMA18G53810.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G13670.1 (Arabidopsis thaliana), 5'ss of exon 8
-AACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGttacctttttccttctttttgattttttcttttattctacttgttgctattattatct-ttacttgtttctattattacggtttttgttgtttcatgttcatggttatcatttatcaatctgcttcagtcttatatttttaatttctgtaga
  ||||||||||||||       || || || |||||||||||||||||||| |||||||||||||||| |  | ||| || || ||   |  | |  ||| || ||    | ||| |||   | | ||   | | ||| || |||   ||||| | |                                                              
CTACAAAGTGGAGAGAAGGTGGTAGCGGACAACATGTTGAATATGATCAACGTCCTGATATGTTTAGgtaatatattttctactgttacctaatataatttgttttatac-tcgctcttaccttttgttgaatctctctcttctta--atttttatag--------------------------------------------------------------

upper sequence: GLYMA18G53810.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g01090.t01 (Vitis vinifera), 5'ss of exon 8
-AACAAAGTGGAGAGACACCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGttacctttttccttctttttgattttttcttttattctacttgttgctattattatctttacttgtttctattattacggtttttgttgtttcatgttcatggttatcatttatcaatctgcttcagtcttatatttttaatttctgtaga
 |||||||||||| ||||   | | |||||||||||||||||||||||| || |||||||||||||||| |  |  |    | ||| ||     | |||    | |  || |||   ||||| | |||| |   |||  |  | |   |||||  |||||  |       |                                                
CAACAAAGTGGAGGGACAGTGCTAATGGGCAGCATGTTGAATATGATCAGCGGCCTGATATGTTTAGgtgaattgatgttgtgtttgtgggccatgctt----tgtgatttttgaacttattttttttaatc-cttcattcttgattatttttactgtttgcttcatccag------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588450|gb|AW704307.1|AW704307
EST:     CCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGA                         GGGACTGTTCGATATGCCAGTGTTCATGCTCATCTGGGAAGAACTGCTAGT
genomic: CCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGttaccttttt ... tttctgtagaGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGT
EST: gi|193538003|gb|FK498020.1|FK498020
EST:     CCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGA                         GGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGT
genomic: CCTCCAGTGGGCAGCATGTTGAATATGATCAACGCCCTGATATGTTTAGGttaccttttt ... tttctgtagaGGGACTGTTCGATATGCCAGTGTTCATGCTCATTTGGGAAGAACTGCTAGT