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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAgtaagttgccacttaatttttcttcttctactttttttttttcctgtttatgttcaataaattaagagtcgtgttgcacgaattgctctaggcaaagttg...

Basic information

species Glycine max
transcript GLYMA18G47980.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47980.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os04g42570.1 (Oryza sativa), 5'ss of exon 5
GAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAgta-agttgccacttaatttttcttcttctactt-------tttttttttcctgtttat-gttcaataaattaag--agtcgtgt-tgcacgaattgctctagg--caaagttg-------
| ||||||||||||||||| ||||| ||| | || || ||||||||||| |||||||||||||| || || || ||||||||||| |||||| || |     |   |||||        ||||       |  |    | ||||| || | |   || |||     | |    | |||| |  ||| |  |    |||| ||        
GCGGTTATGACAAAGAAGATAAGGCGGCTCGGGCTTATGATTTGGCAGCTCTAAAATACTGGGGCACGACCACAACAACAAATTTCCCAgtacagatattcttc--tttttaaaaaaagacttaaagagatgatacaattctgttaattgctttttagatttgtctatttccatgtgcatggtttgtttgaatatcaaaattctgtgcag

upper sequence: GLYMA18G47980.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g40070.1 (Oryza sativa), 5'ss of exon 4
GAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAgtaag----ttgccacttaatttttcttcttctactttttttttttcctgtttatgttcaataaattaagagtcgtgttgcacgaattgctctaggcaaagttg------------------------------------------------------
| || |||||||| || || || ||||| ||||| || ||||||||||| || || || ||||| ||||| || ||||||||||| ||||||||    |   ||  ||| |||     ||    ||| |   |  | |||| ||     |||  ||   |  |       |  |     | ||   ||| |                                                        
GTGGCTATGACAAGGAGGATAAAGCAGCGAGAGCTTATGATTTGGCAGCTCTGAAGTATTGGGGCACAACAACAACAACAAATTTCCCAgtaagaaattaaacatataagtttgtcgttttagttttctagctagcttgttaatagatcatagttttctacacaccacttataatacagtatataaaaattaaattgtgcacttgttgattgcattttcccttttttattataaaatttcactgcag

upper sequence: GLYMA18G47980.1 (Glycine max), 5'ss of exon 7
lower sequence: AT5G17430.1 (Arabidopsis thaliana), 5'ss of exon 5
GAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAgtaagttg-ccacttaatttttcttcttctacttttt---ttttttcctgtttatgttcaataaattaagagtcgtgttgcacgaattgctctaggcaaagttg-----------------------------------------------------------------
|||||||||||||||||||||| |||||||| || |||||||| || |||||||| || |||||||| || || || || || || || ||| |||    | | |||  |   |     | ||  |   || |  ||  |||  ||   |  |||    |    |    |  | |||    ||     |  ||                                                                 
GAGGTTATGACAAAGAAGAAAAAGCAGCTAGGGCTTACGATTTAGCCGCACTAAAGTATTGGGGAACCACCACTACTACTAACTTCCCCgtatgttaattaatcaataatatatacataaattcctaacttctaaccaattttagtctgaataatgccaatctcttaaactagtattatcttactattaactgtcatgtttatattgttacatttgttacaataaaaattagtaatgttggttggatataatattcag

upper sequence: GLYMA18G47980.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S131_139V6.1 (Physcomitrella patens), 5'ss of exon 3
---------GAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACGACAACAAATTTTCCAgtaagt-----------tgccacttaatttttcttcttctactttttttttttcctgtt--tatgttcaataaattaagagtcgtgttgcacgaattgctctaggcaaagttg----------------------------------------------------
         |||| ||||| ||||||||||||||||| ||||||||||| |||||||| || |||||||||||  | |  || || |  || ||||| ||||||           ||||      |  |||| |  ||| ||  | | |   |   |  | ||  |   |    |||    |||  |  ||   ||||||  ||  ||  |                                                    
TATACTTAGGAGGATATGATAAAGAAGAAAAGGCAGCCAGAGCCTACGACTTGGCAGCGCTCAAATACTGGGGTCCCAGCACCACCATCAACTTTCCGgtaagtcatgaatcgtgtgccgtcatgtcattctgccgctaattaatgtgtccacaagtattctgagcttgacgccaaggcatgtggcgagcgtgatgctctgagcttagcagttctgaggaacggtgcctcatgcacgtggaatggtggaatgttgtgcgacag