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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctactttattgggctgttttaattatttggtttcatttgttttgaaactttatatttctaatgtttattgacgttattctgagtgtttgtatttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATTCGGTAGAGATTGTGATGGCTCTTGAGGAGGAGTTTGGGTTCGAGATTCC

Basic information

species Glycine max
transcript GLYMA18G47950.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298170513|gb|HO019137.1|HO019137
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298199521|gb|HO042884.1|HO042884
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|193398730|gb|FK362496.1|FK362496
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|192314180|gb|FK011552.1|FK011552
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|12773697|gb|BG238624.1|BG238624
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|6915802|gb|AW397332.1|AW397332
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298196666|gb|HO041409.1|HO041409
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|120529397|gb|EH257531.1|EH257531
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|10252094|gb|BE819853.1|BE819853
EST:     TCGCGTCATTTNNNGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACNNNAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|12496613|gb|BG047152.1|BG047152
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|13791150|gb|BG653741.1|BG653741
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151406959|gb|EV276774.1|EV276774
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|10237521|gb|BE806409.1|BE806409
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|31311609|gb|CD396812.1|CD396812
EST:     TCGCGTCATTTCCTGCGTCTAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151408382|gb|EV278190.1|EV278190
EST:     TCGCGTCATTTCCTGCATCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|193362078|gb|FK323922.1|FK323922
EST:     TCGCGTCATTTCCTGCGTC-AAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151410532|gb|EV280347.1|EV280347
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|19347701|gb|BM892487.1|BM892487
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298183117|gb|HO028380.1|HO028380
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298196883|gb|HO041626.1|HO041626
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|9902475|gb|BE611443.1|BE611443
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|193641902|gb|FK591118.1|FK591118
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|193367616|gb|FK332078.1|FK332078
EST:     ATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: ATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298169115|gb|HO020475.1|HO020475
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|192314179|gb|FK011551.1|FK011551
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|213598376|gb|DB970204.1|DB970204
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151398839|gb|EV268710.1|EV268710
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGACCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151405844|gb|EV275659.1|EV275659
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGCTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|7639015|gb|AW733347.1|AW733347
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAGAGTTGATCCTTCAAGGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|193357073|gb|FK322327.1|FK322327
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGG
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGG
EST: gi|6725582|gb|AW309981.1|AW309981
EST:     ATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCNTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: ATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|192328358|gb|FK020069.1|FK020069
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|192325281|gb|FK017592.1|FK017592
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|6951614|gb|AW423682.1|AW423682
EST:     GTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: GTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298181739|gb|HO025914.1|HO025914
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|193380751|gb|FK346034.1|FK346034
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298165777|gb|HO008748.1|HO008748
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|16349550|gb|BI975145.1|BI975145
EST:     TCGCGTCATTTCCTGCGCCAAAAACTTCCATAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|6501866|gb|AW203225.1|AW203225
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|15287589|gb|BI471480.1|BI471480
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|26059976|gb|CA802890.1|CA802890
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|13181186|gb|BG352526.1|BG352526
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTTATGCTCACTTGCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|214006522|gb|DB987247.1|DB987247
EST:     CGCGTCATTTCGC-ACGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: CGCGTCATTTC-CTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298165580|gb|HO011629.1|HO011629
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|9899514|gb|BE608482.1|BE608482
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151401613|gb|EV271426.1|EV271426
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298187106|gb|HO034255.1|HO034255
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|8827758|gb|BE211488.1|BE211488
EST:     TCGCGTCATTTCCTGCGTCAAGAACTTCCAGAAAGTTGATCCTTCAAAGG                         GTAACCCTAATGCTCACTTGCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298185406|gb|HO030619.1|HO030619
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|7795308|gb|AW780705.1|AW780705
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298181797|gb|HO025972.1|HO025972
EST:     TCGCGTCATTCCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298199524|gb|HO042887.1|HO042887
EST:     TCGCGTCATTCCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|13480919|gb|BG510262.1|BG510262
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|298199005|gb|HO042368.1|HO042368
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151411700|gb|EV281511.1|EV281511
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|151394226|gb|EV264097.1|EV264097
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|31309543|gb|CD394746.1|CD394746
EST:     CTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACGTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: CTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|19348945|gb|BM893477.1|BM893477
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|31309138|gb|CD394341.1|CD394341
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
EST: gi|33388057|gb|CA851264.1|CA851264
EST:     TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGG                         TTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT
genomic: TCGCGTCATTTCCTGCGTCAAAAACTTCCAGAAAGTTGATCCTTCAAAGGtgaactcaat ... atttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactttatatttctaatgtttattgacgttattctgagtgtttgtatttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATTCGGTAGAGATTGTGATGGCTCTTGAGGAGGAGTTTGGGTTCGAGATTCC
                    tattgac  putative branch site (score: 2)
     tatatttctaatgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctactttattgggctgttttaattatttggtttcatttgttttgaaactttatatttctaatgtttattgacgttattctgagtgtttgtatttgacaggTTAACCCTAATGCTCACTTCCAGAATGACCTTGGATTGGATAGTTTAGATTCGGTAGAGATTGTGATGGCTCTTGAGGAGGAGTTTGGGTTCGAGATTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - gctgttt
- - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgt