1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctttagatatcaagttttcgttttctgttgttattgtgctcctccgttctgcctacggacctggttaatttattatttgagctttaataattttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCTAAGTATGAGTTGCTTCTTCAGG
species | Glycine max |
transcript | GLYMA18G47770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTG TCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGEST: gi|207727303|gb|GD700915.1|GD700915
genomic: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGtaagtggact ... ttttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAG
EST: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTG TCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGEST: gi|18733450|gb|BM527614.1|BM527614
genomic: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGtaagtggact ... ttttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAG
EST: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTG TCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGEST: gi|19934737|gb|BQ079767.1|BQ079767
genomic: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGtaagtggact ... ttttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAG
EST: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTG TCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGEST: gi|19271109|gb|BM887365.1|BM887365
genomic: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGtaagtggact ... ttttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAG
EST: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTG TCACTTGATGGAAAAGATTGAATCTGAGAATTTGCTGCATAGAGCTTTCAGEST: gi|207760542|gb|GD733627.1|GD733627
genomic: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGtaagtggact ... ttttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAG
EST: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTG TCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAG
genomic: TTGGTGGATGAGAATGACCGTGTGGTTGGTCATGATTCCAAATACAATTGtaagtggact ... ttttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAG
gttctgcctacggacctggttaatttattatttgagctttaataattttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCTAAGTATGAGTTGCTTCTTCAGG
ctttaat putative branch site (score: 4)
ttttatt putative PPT
tggttaatttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttagatatcaagttttcgttttctgttgttattgtgctcctccgttctgcctacggacctggttaatttattatttgagctttaataattttattaggTCACTTGATGGAAAAGATTGAAGCTGAGAATTTGCTGCATAGAGCTTTCAGTGTATTCCTGTTCAACTCTAAGTATGAGTTGCTTCTTCAGG
- - - - - - - - - - - -tctgttg
- - - - - - - - - - - - - - - - attgtgc