1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttgttgcgtcaccttagttaagtttatacataatgtaatagactagacaacaagataagtgatgacacattgccaagaaattttttcactttgatagagCAAATATACAGATGTTTCTGGCTAGTTACTGCATCCAACTGAATTTGAAAAATTTGTCCTTGTTTGTATATTTGCAG
species | Glycine max |
transcript | GLYMA18G47480.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
agacaacaagataagtgatgacacattgccaagaaattttttcactttgatagagCAAATATACAGATGTTTCTGGCTAGTTACTGCATCCAACTGAATTTGAAAAATTTGTCCTTGTTTGTATATTTGCAG
ctttgat putative branch site (score: 5)
ttttttcacttt CT-rich tract
aaattttttcacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttgcgtcaccttagttaagtttatacataatgtaatagactagacaacaagataagtgatgacacattgccaagaaattttttcactttgatagagCAAATATACAGATGTTTCTGGCTAGTTACTGCATCCAACTGAATTTGAAAAATTTGTCCTTGTTTGTATATTTGCAG
-ttgttgc
- - - - -tcacctt
- - - - - - - - - - - - - - - - - - - - - - - -acaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgcc