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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTCATGCATTGAAACCATTCAAAGATGCAGCTCATATATTGGCAGAGAAGAAGGATTGGCCCCCATTATATGACGTTCAGGTTCTGAATAACAATAAGgtagtttgctcagttatccgttataccatcaaaattcctagcaagacaagaattatgattgatacaaccttaacaattgaatatgtttatcaagagacaagatgaaggtgagtctcttgagttttttgttaactttgatccaatgctggcag

Basic information

species Glycine max
transcript GLYMA18G47320.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47320.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv15s0046g02160.t01 (Vitis vinifera), 5'ss of exon 9
GATTCATGCATTGAAACCATTCAAAGATGCAGCTCATATATTGGCAGAGAAGAAGGATTGGCCCCCATTATATGACGTTCAGGTTCTGAATAACAATAAGgtagtttgctcagttatccgttataccatcaaaattcctagcaagacaagaattatgattgatacaaccttaa-caattgaatatgtttatcaagagacaagatgaaggtgagtctcttgagttttttgttaactttgatccaatgctggcag
 |||||||| ||||  || ||||||||||||||| || | ||||| |||||| |||||||||| ||| | |||||| || |     ||||||| || |||||   |  |||  |  |   ||  ||      || | | |  |  ||| | |  |   || || |||| | ||       | |    ||  | | |    | |                                                  
AATTCATGCCTTGAGGCCCTTCAAAGATGCAGCTAATCTGTTGGCTGAGAAGGAGGATTGGCCTCCACTGTATGACATTGACTCCTTGAATAATAACAAGgtgagtgactctatgttagattgaacttcttgaacttcaataataacatggacaac--ttaat-caacttgaagttgccaagtcacctttcctaaactttaca--------------------------------------------------