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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtggctaacttcattcaggtatcagtgaccttagtcaatttatgaataactcttttattgtttgcattttatcagCTCTTACTATATCCCAAGTTGCGCGGCCATTGCAATCTTCATCTGCTTTATCTGAATCATCACACATCTATAGGCCAGATTCATCATCTGTGGTTAGAAC

Basic information

species Glycine max
transcript GLYMA18G47230.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207731122|gb|GD705573.1|GD705573
EST:     ACCCACAAAAGGCATCTAAAAATG                         CTCTTACTATATCCCAAGTTGCGCGGCCATTGCAATCTTCATCTGCTTTAT
genomic: ACCCACAAAAGGCATCTAAAAATGgtttgtgtgg ... attttatcagCTCTTACTATATCCCAAGTTGCGCGGCCATTGCAATCTTCATCTGCTTTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcagtgaccttagtcaatttatgaataactcttttattgtttgcattttatcagCTCTTACTATATCCCAAGTTGCGCGGCCATTGCAATCTTCATCTGCTTTATCTGAATCATCACACATCTATAGGCCAGATTCATCATCTGTGGTTAGAAC
                       gaataac  putative branch site (score: 2)
                                              ttttatc  putative PPT
                aatttatgaataactc  TA-rich tract