Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttacacttgatcagcaagaatattcctgtccttaattctctacaaattaaactgtttggattgagatggcattcttctatatatctatgacttagtgatgggtgttgaagtagaagtttctttaaaaagggttattttgatctatttcattttgtgtctatttgcagATTTTGGAAAACGTTTTGGCAATCAATCGCGTAGATCTTGGCAAGGTCCTGAGCATGATGGGCTTCTAGGTAGTGGTTCTTTTCCTCGACCCTCTGGGTA

Basic information

species Glycine max
transcript GLYMA18G47220.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G47220.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv15s0046g02270.t01 (Vitis vinifera), 3'ss of exon 3
gtttttacacttgatcagcaagaatattcctgtccttaattctctacaaattaaactgtttggattgagatggcattcttctatatatctatgacttagtgatgggtgttgaagtagaagtttctttaaaaagggttattttg--atctatttcat--tttgtgtctatttgcagATTTTGGAAAACGTTTTGGCAATCAATCGCGTAGATCTTGGCAAGGTCCTGAGCATGATGGGCTTCTAGGTAGTGGTTCTTTTCCTCGACCCTCTGGGTA
                                                                            |     | | |   | |    ||  | |     ||| ||| |  ||   |   |||   || ||||   |   |||  ||  ||| |||   | |||||||| |||||  || ||||| || || || ||||| |||||||||  |||||| ||||| || ||||| || ||||||||||||||  |||| ||||| ||
---------------------------------------------------------------------------atgaaaaaaaaaaaaaaggaaaagaaaagaaaaatgatgtatatattcaatatcaaaattttgtttttttactcattctatgatttctgttattatgcagATTCTGGAAGGCGATTTGGTAACCAGTCTCGTAGGTCTTGGCAAACTCCTGAACATGACGGACTTCTTGGGAGTGGTTCTTTTCCAAGACCTTCTGGATA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtttctttaaaaagggttattttgatctatttcattttgtgtctatttgcagATTTTGGAAAACGTTTTGGCAATCAATCGCGTAGATCTTGGCAAGGTCCTGAGCATGATGGGCTTCTAGGTAGTGGTTCTTTTCCTCGACCCTCTGGGTA
                      ttttgat  putative branch site (score: 4)
                                            tctattt  putative PPT
                   ttattttgatctattt  TA-rich tract