1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagtcaattatgatattttgaatatggagatgatcaatactctttctccttgttgacaatagtattcttggcaatactcttttttctttgatgttacaggAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAGCTTGTAAAATGAATGGAAGATAGATGAAGATCATTTTATGATAATTGGT
species | Glycine max |
transcript | GLYMA18G46990.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGG AGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAGEST: gi|57575190|gb|CX548165.1|CX548165
genomic: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGtttggctttt ... atgttacaggAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAG
EST: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGG AGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAGEST: gi|8670491|gb|BE191598.1|BE191598
genomic: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGtttggctttt ... atgttacaggAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAG
EST: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGG AGATGATATTNTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAGEST: gi|254333187|gb|GR850437.1|GR850437
genomic: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGtttggctttt ... atgttacaggAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAG
EST: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGG AGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAGEST: gi|9903230|gb|BE612198.1|BE612198
genomic: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGtttggctttt ... atgttacaggAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAG
EST: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTTCTATATGTGATCAAG AGATGATATTT
genomic: CATTCTTGAGTGGATGGAAAGAAGTGACTCATGTCCTATATGTGATCAGGtttggctttt ... atgttacaggAGATGATATTT
ctccttgttgacaatagtattcttggcaatactcttttttctttgatgttacaggAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAGCTTGTAAAATGAATGGAAGATAGATGAAGATCATTTTATGATAATTGGT
ctcttttttctttgat CT-rich tract
ttttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtcaattatgatattttgaatatggagatgatcaatactctttctccttgttgacaatagtattcttggcaatactcttttttctttgatgttacaggAGATGATATTTTGACCAGACAATGAATTAGTTTGATTGTTCTAAAATCAAGCTTGTAAAATGAATGGAAGATAGATGAAGATCATTTTATGATAATTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - tgttgac