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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGTGCGATATGTCTTCCTCAACGAGTCAGTCCTGTGACGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGgttctactacctgtttgcctctctctttaatgtttttacattgttattatctttatacaagataatttatggctgaacaacaatgtatgtcaagatgatcttacttgggggttattctttgtatag

Basic information

species Glycine max
transcript GLYMA18G46780.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46780.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os03g01660.1 (Oryza sativa), 5'ss of exon 3
GAGTTGTGCGATATGTCTTCCTCAACGAGTCAGTCCTGTGACGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGgt-tctactacctgtttgcctctctctttaatgtttttacattgttattatctttatacaagataatttatggctgaacaacaatgtatgtcaagatgatcttacttgggggttattctttgtatag
 | |  ||| ||   ||| ||  || |||| |  |||   |  ||||| || |||||||| |||||||| ||||||||||| ||||| |||||||||||||| | |  |   |       | |||  |      |      ||  |  | ||| | | |    |  || | |  |  ||     || | ||  |||  ||                           
AAATCATGCAATTGCTCTCCCAGAAAGAGTTAACCCTACAAGTTTGAGTTTGATTCTTGACTATTGTCGGTTTCATCAAGTCCCAGGGCGCTCAAACAAGgtatgtcgtgatttaagttttgtcttctggcaactccctttttactgctttctctcttctgcttgtttcaggcgtccacc-tgttgcaagtatagaccatt--------------------------

upper sequence: GLYMA18G46780.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G029307_T01 (Zea mays), 5'ss of exon 2
GAGTTGTGCGATATGTCTTCCTCAACGAGTCAGTCCTGTGACGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGgttctactacctgtttgcctctctctttaatgtttt-tacattgttattatctttatacaag-ataatttatggctgaacaacaatgtatgtcaagatgatcttacttgggggttattctttgtatag
|| |  ||| |||  ||| ||  || |||| | ||| |  |  ||||| || ||||||||||||||||| |||||||| || || || ||||||||||||||| | || |   |||   |   |||| || ||||| |   |||    ||| ||| | | || |||  ||||    ||    | |  | |||                                    
GAATCATGCTATAGTTCTACCGGAAAGAGTTAATCCGGCAAGTTTGAGTTTGATTCTTGATTATTGTCGGTTTCATCAGGTCCCTGGGCGCTCAAACAAGgtt-tgctgcac-tttatattcatcttgaaagttttgtttgttgaatctatatttgttcgagcatatcttatcatggatttcctacatttgtag----------------------------------

upper sequence: GLYMA18G46780.1 (Glycine max), 5'ss of exon 2
lower sequence: GRMZM2G142825_T05 (Zea mays), 5'ss of exon 2
GAGTTGTGCGATATGTCTTCCTCAACGAGTCAGTCCTGTGACGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGgttctactacctgtttgcctctctctttaatgtttttacattgttattatcttt-atacaagataatttatggctgaacaacaatgtatgtcaagatgatcttacttgggggttattctttgtatag
|| |  ||| |||   || ||  || |||| ||||| |  |  ||||| || |||||| |||||||||| |||||||| || || || ||||||||||||||| | || |   ||    ||    |  ||| ||| |   |||    ||  ||| || ||  |||  |||      |    | |  | |  ||                                  
GAATCATGCTATAGTACTACCAGAAAGAGTTAGTCCGGCAAGTTTGAGTTTGATTCTTAATTATTGTCGCTTTCATCAGGTCCCTGGGCGCTCAAACAAGgtt-tgctgcactttatattcatcttcaaatttttgtttgttgaatctacatttgattcagcatatcttagcaggtatttcctacattttgcag---------------------------------

upper sequence: GLYMA18G46780.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv15s0046g02450.t01 (Vitis vinifera), 5'ss of exon 2
GAGTTGTGCGATATGTCTTCCTCAACGAGTCAGTCCTGTGACGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGgttctactacctgtttgcctctctctttaatgtttttacattgttattatctttatacaagataatttatggctgaacaacaatgtatgtcaagatgatcttacttgggggttattctttgtatag
||    ||| |||  |||||| ||  |||| | ||| || | |||||||||| |||||||||| || |||||||||||||||  ||| ||||| |||||||||     || | | |  ||     |||  | ||| |   | | | || | ||       | || |||      | | | | |||| || |    ||  | |  || |||  ||            
GAACAATGCTATAACTCTTCCACAGAGAGTTAATCCCGTCATGTTGAGCTTAGTTCTTGATTACTGCCGTTTTCATCAAGTAATAGGACGCTCGAACAAGgtttg--cacatatctaacttatcattttctttttctgattagatgttctttt-------gctagtttg-aatagcaaagctatgtttgaccttttggccattttttgggcatag-----------