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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactccttacaaaaacattttggattgatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag

Basic information

species Glycine max
transcript GLYMA18G46760.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G46760.1 (Glycine max), 5'ss of exon 11
lower sequence: LOC_Os06g51430.1 (Oryza sativa), 5'ss of exon 11
TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactccttacaaaaacattttggattgatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag
|||| || || ||||| ||||||||||| ||||| || |||||||||||||| || || |||||| |  |||| |||||  |||| |||||| || |||||||        ||  | | | ||| | || ||||| |     || |  |   |   || ||| || ||   ||||           ||     ||| | |  ||||  |  || || ||| |   |               
TACTAAAAATTCCACGAATGTTTGATCCATGGGGAGGATACAGCATCATTGGATTCGGTGACATCCTTCTACCTGGGCTGTTAGTTGCATTTGCATTAAGgttagtctcgcaaagaaaaagaaaaggtc-tattcttacatgtggatac---aagcaagcatgttagagatatga----------ctgctaacagt-attttttcaaaatattaatctttttccag---------------

upper sequence: GLYMA18G46760.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G165351_T03 (Zea mays), 5'ss of exon 9
TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactccttacaaaaacattttggatt--gatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag
| || || || || || ||||||||||| |||||||| |||||||||||||| ||||| || ||| |  | || || ||| |||| || || || |||||||       ||    |  |   |||  || |  |     | || |  |  || ||  |||   || ||||  | ||||     ||||||                                                      
TGCTAAAAATCCCGCGAATGTTTGATCCATGGGGTGGATACAGCATCATTGGCTTTGGTGATATCCTTCTTCCTGGTCTTTTAGTTGCTTTCTCGCTAAGgt-------aagtctaggctgcaatcttcgtggt-----tttttttttttttgcatgaacgaattcgattccgttgaattatttgcttttcag--------------------------------------------------

upper sequence: GLYMA18G46760.1 (Glycine max), 5'ss of exon 11
lower sequence: GRMZM2G096343_T01 (Zea mays), 5'ss of exon 11
TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactccttacaaaaacattttggattgatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag
|  | ||||| || || ||||||||||| |||||||| ||||||||||| || ||||| || ||| |  | || |||||  | || || ||| || ||||||    |  ||  ||| |  || | |  |    | |   |  |  |||   | ||    ||||||  ||          ||| |||    |||| | | | |||  |||| |   ||||        |   || | |  ||
TGTTAAAGATTCCTCGGATGTTTGATCCATGGGGTGGATACAGCATCATAGGCTTTGGTGATATCCTTCTTCCTGGGCTGTTGGTTGCTTTTGCATTAAGgtgatgtt-aatttcagaagtagagg--ctggataactgtaatcaactttcttca----cattttctata---------aatactt---accta-tcactagttt-tgaaatgccttttatccccccccccctctctctag

upper sequence: GLYMA18G46760.1 (Glycine max), 5'ss of exon 11
lower sequence: AT1G01650.1 (Arabidopsis thaliana), 5'ss of exon 11
TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactc-cttacaaaaacattttggattgatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag
|||| ||||| ||||| ||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||||||||| || || ||| | ||  |||| |||||             | ||    || | | ||   || |||||  ||| || |||  |  | | |     |||    || |  ||  ||   |||  ||   | ||  |   |||  |                       
TACTAAAGATCCCACGAATGTTTGATCCTTGGGGTGGCTACAGCATAATTGGATTTGGTGACATTATCTTACCAGGACTGCTTGTAACTTTCGCACTGAGgtt-------------tgcac---tgttacaatc--tcctcttgcgctctctcacattattactatatcaagatctcaactaaactgagttattag--aagcatacaaaagtatgaaatg----------------------

upper sequence: GLYMA18G46760.1 (Glycine max), 5'ss of exon 11
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 11
TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactccttacaaaaacattttggattgatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag
|||| ||||| || || ||||||||||| |||||||| |||||||||||||| ||||| || || |||||||| || || || || ||||| |||||||||||  ||          ||   ||| ||| |  |  |||        || | |       ||||||   |||     ||| |||||| |  |     |||  |  | || |    |||                       
TACTGAAGATCCCGCGAATGTTTGATCCTTGGGGTGGCTACAGCATCATTGGATTTGGTGATATTATCTTACCGGGACTGCTTGTGGCATTCTCACTAAGgtttgat---------cactgtaataatctttattttcaaagaagtatcgtca-------attttg---tgaacttaacattgctttttttcccccaaattatcta-gagcccattttgg---------------------

upper sequence: GLYMA18G46760.1 (Glycine max), 5'ss of exon 11
lower sequence: PP1S124_16V6.1 (Physcomitrella patens), 5'ss of exon 11
TACTCAAGATACCACGTATGTTTGATCCCTGGGGTGGTTACAGCATCATTGGTTTTGGGGACATCATCTTACCAGGGCTTCTAGTAGCATTTTCACTAAGgttgaatagaaaatcatacataaatgatcctattcatcatcttgtactccttacaaaaacattttggattgatgaagacaatgctttgtgcctagttaatggttcatgaacttgatttttctaatgactaactatatacag
| || ||  | |||||| | |||||||| |||||||| ||||| |||||||||||||| || ||  |  | ||||| ||| | ||  | || |   || |||                     |     ||    ||    ||||  |  ||||    |     ||||   || || |      ||      | ||  |||      ||  ||| ||    |                   
TTCTTAAAGTTCCACGTCTTTTTGATCCATGGGGTGGCTACAGTATCATTGGTTTTGGCGATATTTTGCTTCCAGGACTTTTGGTTTCCTTCTGCTTACGgt---------------------actccactgcatatttctttgtggttgttactgccatcgagtggaagaat-aaaatgccagttaacattttgtccatgtgatgcgagtttgtttaaagt-------------------