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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA

Basic information

species Glycine max
transcript GLYMA18G45750.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g49810.1 (Oryza sativa), 3'ss of exon 7
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                         | |  || ||| |  ||  |   || |    |||    | | || |||  | | | |        ||   ||  |||  ||     || || |   || | ||  || |||| |||  ||| ||||| || || ||||||||||| || || || |||||||| |||||||||||||||||||||||||| |||||| | || |||||| 
-----------------------------------------------------------------------------------------gtaa-gtgcaatctagagttcaatt-tggaattgcaatttcttggcaa--tgactga-------gaaacatgtattcggtaaaaactgctcat--ttttctaccatgcagGAGCCTGAGAAACATGTATTCCATCTTGTTACTGACAAGCTGAACTTTGGAGCAATGAACATGTGGTTTTTGTTGAATCCACCTGGAGATGCGACAATCC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os09g36180.1 (Oryza sativa), 3'ss of exon 8
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                                 |  || | | | | |   | |  || |  | | | | ||  || | | |   ||      ||||      ||||          |||| |||  ||||||||| || || ||||| ||||||||  | || ||||||||||||||||||||||||||| |||| |||||||| || || || ||| 
----------------------------------------------------------------------------------------------------------------gtagtttcgtcttcctttttaatcaagtgcaaagtgtgat--aattgttctaacagctatctatggcataatctttt-------cagGAGCCTGAGAAGCATGTTTTCCATCTTGTGACTGATAAGTTGAACTTTGGAGCCATGAACATGTGGTTTTTGCTGAACCCTCCTGGGAAGGCCACCATCC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os09g36190.1 (Oryza sativa), 3'ss of exon 7
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                                | ||||   | | | ||  | |  ||||  | | | | || ||    |   |    |  |   | |   || | |  | | ||  |||| |||  ||||||||| || || ||||| ||||||||  | || ||||||||||||||||||||||||||| |||| || ||||| || || || ||| 
---------------------------------------------------------------------------------------------------------------gtagtttctgtcttcctctttaatcaaatgcaaactgtgat-aagtgataagtgttctgacaactatgtatggcata-accttttcagGAGCCTGAGAAGCATGTTTTCCATCTTGTGACTGATAAGTTGAACTTTGGAGCCATGAACATGTGGTTTTTGCTGAACCCACCTGGGAAGGCCACCATCC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G076276_T03 (Zea mays), 3'ss of exon 7
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                              ||  || ||   |||  |     ||   ||| |  |    ||  ||   ||  ||      ||      |  |  |  ||   ||    |  |  ||  ||  |||| |||   || ||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||| ||||||| |||||  | || |||||  
------------------------------------------------------------------------------------------gttagtgtaatccc--catcttgaaactggaagtgtaatctcttcattatgtctaccattgaatgacccattatatagcacttttgattttctttctataaattttcagGAGCCTGAAAAACATGTGTTTCACCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATGC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G147145_T02 (Zea mays), 3'ss of exon 4
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                             || |||     ||||   | ||| | ||| |||   || |  |||   |||   |   |  ||  |      ||||| | |   |  | ||| |  |         |  |  ||  ||| |||| |||   || ||||| ||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||| ||||||| |||||  | || |||||| 
---------------------------------------------------------------------------gttagtttaa---tgcatctt-caagctggaaata---tgatctctt---cattgtttgtaccattgactggtcaattatattacactcttatttttct---------tgctataaatttgcagGAGCCTGAAAAACATGTATTTCATCTTGTTACTGACAAACTGAACTTTGGGGCCATGAACATGTGGTTTTTGCTGAATCCACCTGGGGATGCAACAATCC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G379577_T01 (Zea mays), 3'ss of exon 7
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaata---aataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                                 | ||| |   ||||    |    || ||   |||   ||   | ||  | |     |  || | ||||| |     |||    ||  || | ||   ||| ||||| || || ||||| ||||| ||  |||| |||||||||||||||||||||||| || |||| || ||||| || ||||| ||| 
----------------------------------------------------------------------------------------------------------------gtattttcc-atgcacttttagtcaattattcaattgcattcctcaaagtagttcctaacat-tgatgtttggaatgtcct---tttcagAAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGAGCCATGAACATGTGGTTTCTGCTGAACCCACCTGGCAAGGCTACCATCC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G386971_T01 (Zea mays), 3'ss of exon 7
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgcctt-cattatcttatgttcgtgtcttccaa---cgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                              || | ||||| ||| | |         | | ||| ||  ||||  |||   |     | | ||| ||| |  ||| |  ||      ||  |||| ||   ||| ||||| || || ||||| ||||| ||  |||| |||||||||||||||||||||||| || |||| || ||||| || || || ||| 
--------------------------------------------------------------------------------------------------------------gtat-tttgcgtgtactttt-------agtcaattattcaattgcactccactaagtagtttctaatggtgatgtttggcatgtctttttcagGAACCAGAGAAACATGTTTTCCATCTTGTGACTGACAAGTTAAACTTTGGAGCCATGAACATGTGGTTTCTGCTGAACCCACCTGGCAAGGCCACCATCC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0048g01300.t01 (Vitis vinifera), 3'ss of exon 8
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgcc-ttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                             || | || |   |     |||||| |     | |  |   | |    |    ||||  |    ||||  | |||| ||  || || |  |  | || |   ||| |||| ||    || ||||| || || || ||||||||||| || ||||||||||||||||| ||||||||| ||||||| || || |||||||| || ||| 
-------------------------------------------------------------------------------------------tttggataagcgaaaggggatttgttag-----gaaagcacaaaagggcatcacatatgttcttcctttttcattcactaagtt-tgctaataccctcga---ttgcagGAACCAGAAAAACATGTATTCCATCTGGTTACTGATAAGCTGAATTTTGGAGCCATGAATATGTGGTTTCTGTTGAACCCCCCAGGAAAAGCAACTATCC

upper sequence: GLYMA18G45750.1 (Glycine max), 3'ss of exon 7
lower sequence: PP1S507_8V6.2 (Physcomitrella patens), 3'ss of exon 8
gtgacttggactgtctttttccataccagtgtgtgtgtacatgtctgtatagtgaatttttttttatagatgatgaataatttgtgcttgcactgtacaacccggacatagtttgtttgcttgtgcatccctgacaaaataaataatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                                                                                                                               |   ||   |    | |  ||  |   || || |||  | ||  |   | | | |||| ||    ||||| ||||||||| |||| ||||| || ||||||| ||| || ||||| ||||||||||||   || | ||||||  | || || ||  
-------------------------------------------------------------------------------------------------nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntttcatg-ctgtgttgttactgaaggctcgtaagttaatttcacctgtc-tcgcagGAACCAGAAAAGCACGTGTTTCACATTGTCACTGACAAGCTAAATTATGGTGCTATGAAGATGTGGTTTTTGGCAAACCTTCCTGGCGATGCCACCATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatataattaaactttgccttcattatcttatgttcgtgtcttccaacgttgtagGATCCTTCGAAGCATGTGTTTCACCTTGTTACTGATAAACTAAATTTTGGAGCCATGAACATGTGGTTTTTGTTGAATCCTCCTGGAAAAGCTACAATCA
                                       tcttcca  CT-rich tract
     aattaaacttt  TA-rich tract