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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCagtaagtattttttataattgttctcattttttcgtctggatcattttttttgtaaaaatattcaaaatatttagttgtgctaggagggcaagtggtcca...

Basic information

species Glycine max
transcript GLYMA18G11950.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G420865_T02 (Zea mays), 5'ss of exon 5
GCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCagtaagtattttttataattgttctcattttttcgtctggatcattttttttgtaaaaatattcaaaatatttagttgtgctaggagggcaagtggtcca---
 | ||  |  | |||   || ||  |  |  | || |||||||||||  | | |||||| ||||| || |||||||||||||||||||||||||| |  ||||||||  | |  ||   |  | | || |  || |||   |   ||  ||  |     | || |    ||          ||  |   ||| ||    |   
-CTTTCTCTTTGCCTGTGTTGGAACGTCTACTTTTTCGTCCAAAGCGTGTACCTGCAATTAGGGTGCTTATTCTTACTCCAACCAGAGAGTTGGCTGCTCAgtaagttctataaattcattgttttatatgatcatcttt-tggcttacttcattgtgttgtt-agcccatcagacataattaaaactacaattgtattatct

upper sequence: GLYMA18G11950.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 4
GCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCagtaagtatt-ttttat---aattgttctc--attttttcgtctg-gatcattttttttgtaaaaatattcaaaatatttagttgtgctaggagggcaagtggtcca
 | ||| |  ||||||| ||||||||||| |||||||||||||| ||  |||  ||||| ||||||||  ||||||||||||||||||||||||| || |||||||| || |||| |   | || | ||    |||||| || |   || |  ||| ||  | |||| |     || | | || |      |   |   |||||   
-CCTTTTCCTTACCTACATTAGAGAGGTTATTGTTCCGTCCAAAACGTGTGCAAGCAATCAGGGTCCTTGTTCTTACTCCAACCAGAGAGTTGGCTGTTCAgtaagtgttattttgtccaagttatactatagtttttttgtttataattaagtttatttcataaatgt---ggatctcttgt-gcatattgtttgtgtgtggta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207840768|gb|GD810961.1|GD810961
EST:     CGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTTGGCAGTCC                         AAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTT
genomic: CGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTT-GGCAGTCCagtaagtatt ... atttttgacaGAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTT