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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGtaacaattattttttccttttaggatatggctatgtgtgcttttcattagatccctaatgtgtataacctacgtttaaggtgttattactagctaatgtt...

Basic information

species Glycine max
transcript GLYMA18G11630.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11630.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g36020.1 (Oryza sativa), 5'ss of exon 5
-AGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGta-acaattattttttccttttaggatatggctatgtgtgcttttcattagatccctaatgtgtataacctacgtttaaggtgttattact-agctaatgtt--
 |||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||| || ||  |||| ||||| ||||||| ||| || || || || |||||    ||| |  ||||  |  | | |||   | |   || |  || |  ||       |||    |  | ||   |||   || |   ||| | | | | |   
TAGTGGTTTTGAAGTAATTTCTGTTGGGAAGAAAAAGCTTGTGCGTTCTGTTCCTACAGAACTGAATAAAGATCACAATGGGATACTTGAGCTAGCTCAGgtttgtaatcagcttttaatagt-gtataataccaca-gtacacttaacaagtatgtggatgc---tgtcataaccttatcatgcttacactgaacaagtatgtg

upper sequence: GLYMA18G11630.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g44790.1 (Oryza sativa), 5'ss of exon 3
-AGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGta-acaattattttttccttttaggatatggctatgt-gtgcttttcattagatccctaatgtgtataacctacgtttaaggtgttattact-agctaatgtt
 |||||||||||||| ||||||||||| |||||||| ||||| ||||| ||||| || ||  |||| ||||| ||||||| ||| || || || || |||||    ||| |    ||  |  |||  |||     |   || |  || |  ||       |||    |  | ||   |||   || |   ||  | | | | | 
TAGTGGTTTTGAAGTAATTTCTGTTGGGAAGAAAAAGCTTGTACGTTCTGTTCCTACAGAACTGAATAAAGATCACAATGGGATACTTGAGCTAGCTCAGgtttgtaatcacagcttt-taatagtgtataatactacagtacacttaacaagtatgtggatgc---tgtcataaccttatcatgcttgcaccgaacaagtatg

upper sequence: GLYMA18G11630.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G026311_T02 (Zea mays), 5'ss of exon 5
-AGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGta-acaattattttttcc----ttttaggatatggct-atgtg-tgcttttcattagatccctaat-gtgtataacctacgttta--aggtgt-tattactagctaatgtt-------------------------------------------------------------
 |||||||||||||| ||||||||||| | || ||| ||||| ||||||||||| || || || || |||||||||| || ||| || |  || || |||||      || |  | | |    |  ||| | ||     | ||| |||  ||  | |  |    ||      |   | ||  | ||  || ||| ||||| ||   ||   |                                                             
TAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGCGTTCAGTTCCTACCGAATTAAATAAAGACCACAGTGGGATACTTGGGCTAGCTCAGgtttgtgcttgtaatgttcgatgtcatagtacatcatagaggtgatgccatttctcatgttggcaaccacaaaggccttatttatagcagctgtatattagtaatcaagagtaggttggaagccttaaattacttttcggttcccctctgctgataacatcattgacatgtag

upper sequence: GLYMA18G11630.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0090g00110.t01 (Vitis vinifera), 5'ss of exon 2
-AGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGtaacaattattttttccttttaggatatggctatgtgtgcttttcattagatccctaatgtgtataacctacgtttaaggtgttattactagctaatgtt-------
 ||||||||||| || || ||||||||||||  ||| |||||| | || || || || ||||||||||||||||| |||   |||||||| || || ||||| |  ||| ||||    ||||    || | ||   ||     | || ||    | ||   | || ||| ||  |   |  | || ||     ||| || |       
TAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATTCAATTCTAGAGCTGGCTCAGgttatgattgttttcaatttttcccttaagacttcttga----tgcaatattctctta---tataaaacttat-tgctattttttcttctcctctattgcttgcctga

upper sequence: GLYMA18G11630.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv19s0090g00070.t01 (Vitis vinifera), 5'ss of exon 5
-AGTGGTTTTGAAGTTATTTCTGTTGGAAAGAAAAAACTTGTTCGTTCAGTTCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGtaacaattattttttccttttaggatatggctatgtgtgcttttcattagatccctaatgtgtataacctacgtttaaggtgttattactagctaatgtt-------
 ||||||||||| || || ||||||||||||  ||| |||||| | || || || || ||||||||||||||||| ||||  |||||||| || || ||||| |  ||| ||||    ||||    || | ||   ||     | || ||    | ||   | || ||| ||  |   |  | || ||     | | || |       
TAGTGGTTTTGAGGTGATATCTGTTGGAAAGCGAAAGCTTGTTAGGTCTGTCCCTACAGAGTTGAACAAAGACCATAATGCAATTCTAGAGCTGGCTCAGgttatgattgttttcaatttttcacttaagacttcttga----tgcaatattctctta---tataaaacttat-tgctattttttcttctcctccattgcttgcctga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014690|gb|CX701432.1|CX701432
EST:     TCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGG                         CTCAAGGATTTGTGACTGTCGATGAAGTAGAAAGGCGGTTATCTTGGAGTT
genomic: TCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGtaacaattat ... ttactgcaggCTCAAGGATTTGTGACTGTCGATGAAGTAGAAAGGCGGTTATCTTGGAGTT
EST: gi|58019358|gb|CX706100.1|CX706100
EST:     TCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGG                         CTCAAGGATTTGTGACTGTCGATGAAGTAGAAAGGCGGTTATCTTGGAGTT
genomic: TCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGtaacaattat ... ttactgcaggCTCAAGGATTTGTGACTGTCGATGAAGTAGAAAGGCGGTTATCTTGGAGTT
EST: gi|58016320|gb|CX703062.1|CX703062
EST:     TCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGG                         CTCAAGGATTTGTGACTGTCGATGAAGTAGAAAGGCGGTTATCTTGGAGTT
genomic: TCCAACTGAGTTGAACAAAGACCACAATGAGATTCTAGAACTTGCCCAGGtaacaattat ... ttactgcaggCTCAAGGATTTGTGACTGTCGATGAAGTAGAAAGGCGGTTATCTTGGAGTT