1 5' 3' | 2 5' 3' | 3 5' 3' |
ggtaaaataaagctttgacttatttatatttgttagtcacgtaagtggtgagaatttgggggtgatggaagaaacccactctttgttaccctttagtatgctatgtacctaaaccatgacatatatgtattaatgtgctataatttaacaaggttttgcaGCATAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGAGCTAGGATCTGGAAACAAGTTGGATGATATAAGGAATTTAGGAACTGGACTTGAAGAT
species | Glycine max |
transcript | GLYMA18G11530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAGGTTTTGCAEST: gi|58014877|gb|CX701619.1|CX701619
genomic: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGA------GC---TTTTGCAggtaaaataa ... ag
EST: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAGGTTTTGCAEST: gi|254321702|gb|GR825019.1|GR825019
genomic: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGA------GC---TTTTGCAggtaaaataa ... ag
EST: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAGGTTTTGCAEST: gi|254347681|gb|GR853930.1|GR853930
genomic: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGA------GC---TTTTGCAggtaaaataa ... ag
EST: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAGGTTTTGCAEST: gi|13789988|gb|BG652579.1|BG652579
genomic: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGA------GC---TTTTGCAggtaaaataa ... ag
EST: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCA GGTTTTGCAGCATAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGA
genomic: CCCAAACCTGCAGACTATACTGAAACTGGCAGAGTGAATGAGCTTTTGCAggtaaaataa ... aggttttgcaG------CA---TAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGA
tacctaaaccatgacatatatgtattaatgtgctataatttaacaaggttttgcaGCATAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGAGCTAGGATCTGGAAACAAGTTGGATGATATAAGGAATTTAGGAACTGGACTTGAAGAT
atatatgtattaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtaaaataaagctttgacttatttatatttgttagtcacgtaagtggtgagaatttgggggtgatggaagaaacccactctttgttaccctttagtatgctatgtacctaaaccatgacatatatgtattaatgtgctataatttaacaaggttttgcaGCATAACAAAACAGAGAACCAGGCATCCACCATAGCAGCAGAGCTAGGATCTGGAAACAAGTTGGATGATATAAGGAATTTAGGAACTGGACTTGAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA