Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcttcattcttccacccatcattctatttcttagttatttcaatgcactccatgacagatctcttgctttccagGTGACTTTCGATGATGATAAATCAAAAGCAGTGGACTTCAATATTATTTGGTCTTCGTCACCCGACAGTTTAAAGTATAGTTCCTACATCAGTAAACCAG

Basic information

species Glycine max
transcript GLYMA18G11480.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11480.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 3'ss of exon 10
--------------------------gtgcttcattcttccacccatcattctatttcttagttatttcaatgcactccatgacagatctcttgctttccagGTGACTTTCGATGATGATAAATCAAAAGCAGTGGACTTCAATATTATTTGGTCTTCGTCACCCGACAGTTTAAAGTATAGTTCCTACATCAGTAAACCAG
                           | |||| ||||||  |   |  ||   ||  ||| ||||||  ||  | |   ||  |  | | |   ||| ||||||||||| |||||| |||||||| ||||||| |  || || |||||||||||||| ||| | || | || | |||| |  || ||  ||||    ||||
cttttttaacacacctcagcatttttcttcttc-ttcttcttcttcttttttatttatttatttatttttatttaatgtgtg-tatgtttgtgtgtttgcagGTGACTTTAGATGATCATAAATCAGAAGCAGTTGGTTTTAAAATTATTTGGTCTTCTTCAGCTGATATTTCAGAGTACAAGTCGTATTTCAGCTTGCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattctatttcttagttatttcaatgcactccatgacagatctcttgctttccagGTGACTTTCGATGATGATAAATCAAAAGCAGTGGACTTCAATATTATTTGGTCTTCGTCACCCGACAGTTTAAAGTATAGTTCCTACATCAGTAAACCAG
                                        tctcttgctttcc  CT-rich tract
     tatttcttagttattt  TA-rich tract