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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGACTGAAAAAGCCCCAGCGGCATTGGGGCCGTATTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGgtttgatatcattcatctgaagttcactcttctgtatatgtgtgcaattgtgctggcttcctgataatatatggttagctctctaatgcag

Basic information

species Glycine max
transcript GLYMA18G11100.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G11100.1 (Glycine max), 5'ss of exon 2
lower sequence: LOC_Os07g33240.1 (Oryza sativa), 5'ss of exon 2
TCAGACTGAAAAAGCCCCAGCGGCATTGGGGCCGTATTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGgtttgatatcattcatctgaagttcactcttctgtatatgtgtgcaat-------tgtgctggcttcctgataatatatggttagctctctaatgcag------------------
|||||| || || ||||| || ||||| || ||||||||||| || ||||||||||||||  |  | ||||| || || ||||||||||| |  |||||||||||        ||| ||   |    || |     ||| | ||||         | |||    || ||| |  ||  ||      |  || ||  ||                  
TCAGACAGAGAAGGCCCCGGCAGCATTAGGCCCGTATTCTCAGGCCATCAAAGCCAACAATATGGTCTTTGTCTCTGGAGTTCTTGGCCTAAACCCTGAGgtttgtccctcaacatatgttttgtgatccttcacgtatctctgcatcataaatgtatgccactttgctggttttaggtgccagtataactgatatagagtaacttctgtctccag

upper sequence: GLYMA18G11100.1 (Glycine max), 5'ss of exon 2
lower sequence: Vv19s0090g00390.t01 (Vitis vinifera), 5'ss of exon 2
TCAGACTGAAAAAGCCCCAGCGGCATTGGGGCCGTATTCTCAAGCAATCAAAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGgtttgatatcattcatctgaa-----gttcac------tcttctgtatatgtgtgcaattgtgctggcttcctgataatatatggttagctctctaatgcag
||| || || || || ||||| || ||||| || || ||||| || ||||||||||| |||||  | |||||||| |||||||| || |||||||| |||||| |  || ||| | |   |     ||| |       |||  | ||| |   |   ||| |||   |||  || | |||| | ||      | ||||||||
TCAAACGGACAAGGCTCCAGCAGCTTTGGGACCTTACTCTCAGGCCATCAAAGCCAATAACCTAGTCTTTGTGTCCGGTGTTCTGGGTCTTATTCCAGAGgttcgtcat-atttaccaagacatgtgtttatgtaatatctgttatat-tacttagtattatgc-aactttgtggtcatattttgtctataatttaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298191613|gb|HO039092.1|HO039092
EST:     AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAG                         ACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG
genomic: AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGgtttgatatc ... tctaatgcagACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG
EST: gi|298166155|gb|HO009126.1|HO009126
EST:     AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAG                         ACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG
genomic: AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGgtttgatatc ... tctaatgcagACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG
EST: gi|298179458|gb|HO027929.1|HO027929
EST:     AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAG                         ACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG
genomic: AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGgtttgatatc ... tctaatgcagACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG
EST: gi|298178386|gb|HO024121.1|HO024121
EST:     AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAG                         ACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG
genomic: AAGCCAACAACCTTCTGTTTGTGTCAGGTGTTCTTGGCCTTATTCCTGAGgtttgatatc ... tctaatgcagACAGGGAAGTTCATCTCTGATAATGTTGAAGATCAGACAGAGCAG