1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tattcctctatttctatcattcttctttcttttctctctatttcacccaaacaaagcataaggttttccaaactcatatttctcggctcaaaattataggCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAATTAGAAAGAGATGACCAACTTTTCAAGGCCTT
species | Glycine max |
transcript | GLYMA18G11030.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAGCTTATGGAAGCTG CTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTAEST: gi|16347333|gb|BI972928.1|BI972928
genomic: ACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAGCTTATGGAAGCTGtaagctgttc ... aaattataggCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTA
EST: ACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAGCTTATGGAAGCTG CTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTA
genomic: ACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAGCTTATGGAAGCTGtaagctgttc ... aaattataggCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTA
cccaaacaaagcataaggttttccaaactcatatttctcggctcaaaattataggCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAATTAGAAAGAGATGACCAACTTTTCAAGGCCTT
tcaaaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattcctctatttctatcattcttctttcttttctctctatttcacccaaacaaagcataaggttttccaaactcatatttctcggctcaaaattataggCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACTGCTACAATGCATAGACACAAATTAGAAAGAGATGACCAACTTTTCAAGGCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaact