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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTGTGGTGCACTGCACTGTGACCATGAAATGAATTCTGGATCAAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGAggtatgctttggtctgtattcatttgctgtaacgtaaccaaatttatttgtgtttctaatttacctgtttttcata

Basic information

species Glycine max
transcript GLYMA18G10750.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323760|gb|FK015586.1|FK015586
EST:     NNNTCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGA                         GAGCTTAGCCGATAGTTGTTTTCCTGTCACTGAGGGCCCTGCGGCAAGCCG
genomic: AAATCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGAggtatgcttt ... gtttttcataGAGCTTAGCCGATAGTTGTTTTCCTGTCACTGAGGGCCCTGCGGCAAGCCG
EST: gi|192334208|gb|FK026589.1|FK026589
EST:     NNNTCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGA                         GAGCTTAGCCGATAGTTGTTTTCCTGTCACTGAGGGCCCTGCGGCAAGCCG
genomic: AAATCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGAggtatgcttt ... gtttttcataGAGCTTAGCCGATAGTTGTTTTCCTGTCACTGAGGGCCCTGCGGCAAGCCG
EST: gi|192306735|gb|FG998875.1|FG998875
EST:     NNNTCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGA                         GAGCTTAGCCGATAGTTGTTTTCCTGTCACTGAGGGCC-TGCGGCAAGCCG
genomic: AAATCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGAggtatgcttt ... gtttttcataGAGCTTAGCCGATAGTTGTTTTCCTGTCACTGAGGGCCCTGCGGCAAGCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGTTTGTGGTGCACTGCACTGTGACCATGAAATGAATTCTGGATCAAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAAAAATAAACATCTATGTGAggtatgctttggtctgtattcatttgctgtaacgtaaccaaatttatttgtgtttctaatttacctgtttttcata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC