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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatgtagaatcaatgttacttgtagctcttggagatatgaacttgttgctgtttattttattttatgctctaataaaatttgaaggaatctaga...

Basic information

species Glycine max
transcript GLYMA18G10370.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193419128|gb|FK382736.1|FK382736
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGTAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAA
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTG-AGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAA
EST: gi|193315221|gb|FK282617.1|FK282617
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|208197263|gb|GD999408.1|GD999408
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|207687025|gb|GD670511.1|GD670511
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAA
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAA
EST: gi|193414681|gb|FK381363.1|FK381363
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|21889038|gb|BQ742251.1|BQ742251
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|208261511|gb|GE059950.1|GE059950
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|10847385|gb|BF071541.1|BF071541
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|193555141|gb|FK515138.1|FK515138
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|193461089|gb|FK426752.1|FK426752
EST:     TGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: TGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|208277347|gb|GE081186.1|GE081186
EST:     GGT-GAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|207767345|gb|GD740653.1|GD740653
EST:     GGT-GAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|15812973|gb|BI785248.1|BI785248
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGATATTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|193339485|gb|FK302732.1|FK302732
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|18039429|gb|BM307723.1|BM307723
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|193618315|gb|FK572495.1|FK572495
EST:     CCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: CCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|208193885|gb|GD993426.1|GD993426
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAAGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT
EST: gi|208041376|gb|GD837744.1|GD837744
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTAGGACAATCAGAA                         GATAGCAAATAATCTTGACCG
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGT-GGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCG
EST: gi|208142125|gb|GD936999.1|GD936999
EST:     GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAA                         GATAGCAAATAATCTTGACCGCATGGTATCAACCCTTGGAGGAAATCCTCT
genomic: GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatg ... tggaactgcaGATAGCAAATAATCTTGACCGTATGGTATCAACCCTTGGAAGAAATCCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGGAGTTCCAAATCTGGCCATGGTTGAGAGTGTGGACAATCAGAAggtagagatgtagaatcaatgttacttgtagctcttggagatatgaacttgttgctgtttattttattttatgctctaataaaatttgaaggaatctaga

 GTGGAG