1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatctagagcatgattttgacctcatgattatgtcaaccaatctactatttccaaggctagttttatacttaaatttcttaaaattgtttgatatcccagGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATA
species | Glycine max |
transcript | GLYMA18G10210.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCG GTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTEST: gi|209717305|gb|BW659020.1|BW659020
genomic: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGgtacctctct ... gatatcccagGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTT
EST: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCG GTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCACAAGAAGGACTTCTTEST: gi|209697326|gb|BW655567.1|BW655567
genomic: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGgtacctctct ... gatatcccagGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTT
EST: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCG GTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTEST: gi|209719216|gb|BW679782.1|BW679782
genomic: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGgtacctctct ... gatatcccagGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTT
EST: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCG GTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTT
genomic: CTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGgtacctctct ... gatatcccagGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTT
ctatttccaaggctagttttatacttaaatttcttaaaattgtttgatatcccagGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATA
gtttgat putative branch site (score: 5)
tagttttatacttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatctagagcatgattttgacctcatgattatgtcaaccaatctactatttccaaggctagttttatacttaaatttcttaaaattgtttgatatcccagGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - gcatgat
- - - - - - - - - - cctcatg
- - - - - - - - - - - - - - - - - caaccaa