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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTTCGTCCGCAAGTACGGCCTCCGGAGGTTCCTCTTCTTCGATAAGCTCTGCGATGAGAGCGAGACCGTCAGAACCAACTACATGGCGCAGCACAATgtatgtcactttctctatccttttttttttatgggcaattttttcttcacatgtattagtcgttaattaatttttgttaggatgttaattagaaatattt...

Basic information

species Glycine max
transcript GLYMA18G10180.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10180.1 (Glycine max), 5'ss of exon 1
lower sequence: AT3G20300.1 (Arabidopsis thaliana), 5'ss of exon 1
CGTCTTCGTCCGCAAGTACGGCCTCCGGAGGTTCCTCTTCTTCGATAAGCTCTGCGATGAGAGCGAGACCGTCAGAACCAACTACATGGCGCAGCACAATgtatgtcactttctctatccttttttttttatgggcaatttt---ttcttcacatgtattagtcgttaattaatttttgttag-gatgttaattagaaatattt
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CAGATTCGTTAGCAAGTATGGTCTCCGACGGTTCCTATTCTTTGATAAGCTTTGGGATGAGAGCGAGACCGTTCGTCTAGGCTACACCAATCAGCTCAATgtgagtttttgtttttcttttcctaattccgtttcgaatttcgcattcttaatttggtttactcttgcttcgtttgtcgtttccaatatgaattttgggt----