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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATAATGCAAGTAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCCCGGATTCTGGTCAACAAAATTCCAGgtatttgttgaatgtgagaaactattattatttatttgatcaattattagcatcaaactccttacatgattagctcaaaaggggtgccgtatcattggaa...

Basic information

species Glycine max
transcript GLYMA18G10090.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G10090.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os06g20370.1 (Oryza sativa), 5'ss of exon 8
----------GGTATAATGCAAGTAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCCCGGATTCTGGTCAACAAAATTCCAGgtatttgttgaatgtgagaaactattattatttatttgatcaattattagcatcaa-actccttacatgatta-----gctcaaaaggggtgccgtatcattggaa------------------------------------------------------------------------------------------
          | |||||  ||||  ||||||| ||| | || ||||||||||| || || || |||||||| |||||||| ||||||||||| | ||| |||  || ||     |    | | ||  ||| ||   |   |    |  |||   |  | ||     |  ||   ||  |    | | | || |                                                                                           
GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGgtatgt-ttggatgacagcaatggaaacctctcacttagtcagttgcaaattttttcatacctaggaacactatatatgtccatggggcttattattttactgtaccgttcatttttgttttgagtaaatttatgaattctgctaatcatatgctttgttagtgtttggctaatgtaatgaatggttttattctag

upper sequence: GLYMA18G10090.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os02g48830.1 (Oryza sativa), 5'ss of exon 8
----------GGTATAATGCAAGTAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCCCGGATTCTGGTCAACAAAATTCCAGgtatttgttgaatgtgagaaactattattatttatttgatcaattattagcatcaaactccttacatgatt-agctcaaaaggggtgccgtatcattggaa----------------------------------------------------------------------------
          |||||||  || |  ||||||| ||| | || |||||||||||||| || ||||| ||||| |||| ||| |||||||||   |  ||    ||   || ||  | || || |   |  || |  ||     || ||  |||||  ||  | ||||| | |     | | |      ||                                                                            
GATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGTGCAGAAAAGGCCCGTATTCTAGTCAGCAAGATTCCAGgtgcctactgtg-atgcataagta--aatagttttggcagtaaatgataattctaagct--ttacacaatccaactcaagaagctctgcatttgggcataatgcaggataggctatatcttttctcctgtaaatattgtttttcctgttcgttgctaatgacagcaattttttttag

upper sequence: GLYMA18G10090.1 (Glycine max), 5'ss of exon 10
lower sequence: AT5G55230.1 (Arabidopsis thaliana), 5'ss of exon 8
----------GGTATAATGCAAGTAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCCCGGATTCTGGTCAACAAAATTCCAGgtatttgttgaatgtgagaaactattattatttatttgatcaattattagcatcaaactccttacatgattagctcaaaaggggtgccgtatcattggaa
          |||| |  ||||| |||||||||||||| || |||||  | || |||||||| ||||||||||| | ||| ||||| ||||| ||| ||||     | |    ||| || || |||   || |  |  |||   | ||    | |    || |   |     ||   | | ||     
GATCAGAACAGGTACAGCGCAAGCAGAGGTGCACACTTGAATCTCAAGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTGgtatgtgtagaataactaagat--atatcatatacttg-caaacttctctcat-gtattcacatcttataaagattggatcttttgttatgt-ataaag-