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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcccctcatatgttaattttctttgcaacttttactgtccattttattctctcatttctgaaatctaatcctttctcttcttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG

Basic information

species Glycine max
transcript GLYMA18G10060.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120496955|gb|EH225122.1|EH225122
EST:     ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTTATT                         GATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
EST: gi|192328423|gb|FK020711.1|FK020711
EST:     ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATT                         GATGACTTGGAC-AACATGTAGATGTT
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTT
EST: gi|151404720|gb|EV274534.1|EV274534
EST:     ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATT                         GATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAG-
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
EST: gi|120496797|gb|EH224964.1|EH224964
EST:     ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTTATT                         GATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
EST: gi|208189581|gb|GD992245.1|GD992245
EST:     TATTGCGTTGGCTGTGAATGAAGAGCTGGATCTACATACCAGACTCATT                         GATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
genomic: TATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
EST: gi|192328424|gb|FK020712.1|FK020712
EST:     ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATT                         GATGACTTGGACCAACATGTAGATGTTACAGATTTTCGGCTGAGG
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
EST: gi|298192925|gb|HO033359.1|HO033359
EST:     ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATT                         GATGACTTGGACCAACATGT
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGT
EST: gi|254334673|gb|GR844458.1|GR844458
EST:     ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATT                         GATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
EST: gi|192309834|gb|FK002946.1|FK002946
EST:     ATATTGCGTTGGCTGTGAATGAAGGGCTGAATCTACATACCAGACTCATT                         GATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
genomic: ATATTGCGTTGGCTGTGAATGAAGAGCTGAATCTACATACCAGACTCATTgtatgttccc ... cttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtccattttattctctcatttctgaaatctaatcctttctcttcttttgttagGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGG
                            atctaat  putative branch site (score: 3)
                             tctaatcctttctctt  CT-rich tract
      attttattct  TA-rich tract