Sequence
atgc intronic sequence ATGC exonic sequenceGCTTGACATGGCTGATGAGCAGACACCTCTTCAGGATGCTTTCCGTCTAGCAGATGATGTTCTACGACAAGGAGTACAGGGAATATCAGACATCATAACAgtgagttgatattgattagcaattttttcagactttctatctggtgatccctttagattgatagaaagtgaagaaaagaggagacgttaaaggcttgaat...
Basic information
species | Glycine max |
transcript | GLYMA18G10030.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G10030.1 (Glycine max), 5'ss of exon 5
lower sequence: AT5G55280.1 (Arabidopsis thaliana), 5'ss of exon 4
GCTTGACATGGCTGATGAGCAGACACCTCTTCAGGATGCTTTCCGTCTAGCAGATGATGTTCTACGACAAGGAGTACAGGGAATATCAGACATCATAACAgtgagttgatattgattagcaattttttcagactttctatctggtgatccctt-tagattgat-----agaaagtgaagaaaagaggagacgttaaaggcttgaat--
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GCTAGATATTGCTGATGAACAGACGCCACTTCAGGACGCGTTTCTTCTTGCAGATGATGTTTTACGCCAAGGAGTACAAGGAATCTCAGATATTATTACTgtgagtctatgtattgtataaagcacat--aacaagttggttgatgaatgcttattgattgatccccaaagattctgaggaaacagtatatattttgttctttttcag
upper sequence: GLYMA18G10030.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv19s0090g01320.t01 (Vitis vinifera), 5'ss of exon 4
GCTTGACATGGCTGATGAGCAGACACCTCTTCAGGATGCTTTCCGTCTAGCAGATGATGTTCTACGACAAGGAGTACAGGGAATATCAGACATCATAACAgtgagttgatattgattagcaattttttcagactttctatctggtgatccctttagattgatagaaagtgaagaaa-agaggagacgttaaa-ggcttgaat-----
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GCTGGATATTGCCGATGAACAGACACCTCTTCAGGATGCTTTCCTGCTTGCTGATGATGTTTTGCGCCAAGGGGTGCAAGGGATTTCAGACATAATTACAgtgagt-gat-ttgtatagggctacatttg-----tccttggggaacttggtctgcattatcagctcataccctaacatatcacctgttagatagtttcaaccatatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298189601|gb|HO038004.1|HO038004EST: GGAGTACAGGGAATATCAGACATCATAACA ATACCTGGGCTTGTAAATGTGGATCTTGCTGATGTAAAAGCTGTGATGAAA
genomic: GGAGTACAGGGAATATCAGACATCATAACAgtgagttgat ... ctttttacagATACCTGGGCTTGTAAATGTGGATTTTGCTGATGTAAAAGCTGTGATGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTGACATGGCTGATGAGCAGACACCTCTTCAGGATGCTTTCCGTCTAGCAGATGATGTTCTACGACAAGGAGTACAGGGAATATCAGACATCATAACAgtgagttgatattgattagcaattttttcagactttctatctggtgatccctttagattgatagaaagtgaagaaaagaggagacgttaaaggcttgaat
- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaaaa