Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCTCGATGCTCAGCCAGAGTTGTTCATTCATATTATTCCCGACAAGACTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcgagatgttcttttgttgagatatttgtggaccaatttttttgtttacttggttagtctctaattgatttttgtgatgttttttttca

Basic information

species Glycine max
transcript GLYMA18G08220.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193473569|gb|FK437186.1|FK437186
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|151402250|gb|EV272063.1|EV272063
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|193531217|gb|FK487948.1|FK487948
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|13125720|gb|BG316290.1|BG316290
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|298180770|gb|HO022209.1|HO022209
EST:     CTAACAATTCGCTGACCATTGTTGCCAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|10846004|gb|BF068997.1|BF068997
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAAACAACTTGGG
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAA-CAACTTGGG
EST: gi|10845994|gb|BF068991.1|BF068991
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         TATTTGGGTAAACAACT
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGG-TAAACAACT
EST: gi|193309837|gb|FK274545.1|FK274545
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGG
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGG
EST: gi|57574579|gb|CX547554.1|CX547554
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|7685027|gb|AW755675.1|AW755675
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|192297125|gb|FG988221.1|FG988221
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|16996959|gb|BM086331.1|BM086331
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|208285234|gb|GE089086.1|GE089086
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
EST: gi|9987183|gb|BE661291.1|BE661291
EST:     CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCT                         GATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC
genomic: CTAACAATTCGCTGACCATTGTTGACAGTGGCATTGGCATGACCAAAGCTggtaagtcga ... ttttttttcaGATTTGGTAAACAACTTGGGTACAATTGCTAGGTCTGGTACCAAGGAATTC