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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atactcgtttttcttggaatgtgtaaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG

Basic information

species Glycine max
transcript GLYMA18G03480.1
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os01g51220.1 (Oryza sativa), 3'ss of exon 4
----atactcgtttttcttggaatgtgtaaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG
    ||| |   |   ||  |  |   ||   |  |||   |  | | |  | | |    |       |    ||   ||| ||||| ||  | |  | | |||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||| || || |||   
agttataataaatcacct--gtgttattagtctgatcactaacttaagtgctcttgtttatatgctgatcctgata-gttgctttttcttgttttgttttcagGTGGCTGACTCACTTGAGAAAGGAACAGAACATGAGGATGAATACATGATTAGTGAAAAGGAGCTTCTTGTTAACCG-

upper sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G439457_T02 (Zea mays), 3'ss of exon 5
atactcgtt--tttcttggaatgtgtaaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG
||  | |    |   |   ||  ||  |  || |    ||||     | ||      |    |   ||   |  | | ||  ||  ||| |  |  |  |||| ||||| ||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| || || |||   
atggttgacggtaaatgttaacctgcgatattcttt-ttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCG-

upper sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G439457_T01 (Zea mays), 3'ss of exon 5
atactcgtttttc--ttggaatgtgtaaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG----------------------
||  | |    |   |   ||  ||  |  || |    ||||     | ||      |    |   ||   |  | | ||  ||  ||| |  |  |  |||| ||||| ||||| || || ||||| ||||| || ||||||||||||||||||||||||||||| || || |||  |                      
atggttgacggtaaatgttaacctgcgatattcttt-ttatcactgaacttcgttcacatgattgtttcttaattctggtagttgctttattatgaaccagGTGGCTGACTCACTTGAAAAGGGAACAGAACACGAGGATGAATACATGATCAGTGAAAAGGAGCTTCTTGTTAACCGGTTTGTGAACTTGTGTACTTCAT

upper sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
lower sequence: AT5G58030.1 (Arabidopsis thaliana), 3'ss of exon 4
atactcgtttttcttggaatgtgtaaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG
 |    |    | |   |||      ||||||    | | |  ||      ||   | |||   ||  ||   |       |||     | |    ||||| ||||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||| || || ||||  
gtgagtggcgatttca-aattcaattagttgttgagtgtttctatcgacatgcctgttcctggattctaactcaca----cttaacgaacatgccatagGTTGCTGATTCACTTGAAAAAGGAACAGAACATGAAGATGAGTACATGATCAGTGAAAAGGAGCTTCTTGTTAACAG-

upper sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv11s0037g00110.t01 (Vitis vinifera), 3'ss of exon 4
atactcgtttttcttggaatgtgt--aaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttg-tcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG
 |   | |  |||||    | |||  ||||  | | | |   ||  |||  |  ||        ||      | |||  |||| |||||| | | ||||||||||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||| || |||||||| || || |  
-tggccatacttcttcatttctgttaaaagaggcctgatgaatttttatcatgccatgaaatgcagccatctt-tatcattttctatttgatatcatattagGTAGCTGACTCACTTGAGAAAGGTACTGAGCACGAAGATGAATACATGATCAGTGAGAAAGAGCTCCTGGTTAATAG-

upper sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S266_44V6.1 (Physcomitrella patens), 3'ss of exon 2
---atactcgtttttcttggaatg-tgtaaagttgtcagctatc----ttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG
    |   | || |  |    ||  | | |  | ||  | | |     ||  | | |||   ||||||  | |   | ||| | | |||||     ||       |||| || |||||  | ||||| || || |||||||||||||||||||||||||| || ||||| || || |||||||| 
aacgtggcctttctgatcaagatactattatatcgtaggtttttcaattttgtgtgttaagtgctcccacactgagactgtttgggttttttccactc-------agGTTGCGGATTCTTTAGAGAAGGGTACGGAACATGAAGATGAATACATGATCAGCGAGAAGGAACTGCTTGTAAACAA-

upper sequence: GLYMA18G03480.1 (Glycine max), 3'ss of exon 5
lower sequence: PP1S303_47V6.1 (Physcomitrella patens), 3'ss of exon 4
------------------atactcgtttttcttggaatgtgtaaagttgtcagctatctta-atattttagcagctccctaa----gtttcaatgtattgttttttat---ttgtcttatatt-aggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG
                  |   |||    |||  ||  || |   ||    || | ||| | || |  | |   | | ||||     ||||| | | ||   ||||||   |||| ||| | | |||| || |||||  | || || || || |||||||||||||| |||||||||||||| |||||||| || || ||||  
gtttttaacttggcccttacgatcgagcctct--gatagtttggtgtctcaagttttctcacatgtaattgactcgcactaatgtcatttcattttgtttcattttatattttgtattacactcagGTGGCAGATTCTTTAGAAAAGGGCACGGAACATGAAGATGAGTACATGATCAGTGAGAAGGAGCTTCTTGTTAACAG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298197159|gb|HO041902.1|HO041902
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|208197894|gb|GD998009.1|GD998009
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|192302735|gb|FG993755.1|FG993755
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|208263408|gb|GE063318.1|GE063318
EST:     GTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: GTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|208109910|gb|GD906228.1|GD906228
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|5606114|gb|AI900212.1|AI900212
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|193662323|gb|FK603923.1|FK603923
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|6725080|gb|AW309479.1|AW309479
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|254342930|gb|GR859092.1|GR859092
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|254334110|gb|GR849028.1|GR849028
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|192304323|gb|FG996449.1|FG996449
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|208307666|gb|GE107610.1|GE107610
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|193445949|gb|FK413530.1|FK413530
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|298194561|gb|HO043033.1|HO043033
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|21676489|gb|BQ628840.1|BQ628840
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|151411324|gb|EV281135.1|EV281135
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|31309603|gb|CD394806.1|CD394806
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|192302734|gb|FG993754.1|FG993754
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|254342931|gb|GR859093.1|GR859093
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|192297468|gb|FG992696.1|FG992696
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|51334757|gb|CO978623.1|CO978623
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|193607147|gb|FK557424.1|FK557424
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGA
EST: gi|254334109|gb|GR849027.1|GR849027
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|298178531|gb|HO024266.1|HO024266
EST:     TATTCTTCCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|298163034|gb|HO011767.1|HO011767
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|208178433|gb|GD977014.1|GD977014
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|298176675|gb|HO026796.1|HO026796
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|6567248|gb|AW234859.1|AW234859
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|192323071|gb|FK017012.1|FK017012
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|192304324|gb|FG996450.1|FG996450
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
EST: gi|193430306|gb|FK397270.1|FK397270
EST:     TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGG                         TAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA
genomic: TATTCTTTCTTTTGTACACAGTACAGTGTGGAAAGTATTATTTGGAAAGGtgagcttctt ... ttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG
                                ttttttatttgtctt  CT-rich tract
                   tttcaatgtattgttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atactcgtttttcttggaatgtgtaaagttgtcagctatcttaatattttagcagctccctaagtttcaatgtattgttttttatttgtcttatattaggTAGCTGATTCACTGGAGAAAGGAACTGAACATGAAGATGAATACATGATCAGTGAAAAGGAGCTCCTAGTAAACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - gctccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caatgta