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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAGGTGGATGACCCCGAGTGGAGGAAGAAAGAAGAGAAGATCGTGAGGGACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcagattattaaatcaattcattattgttaagattgcaagtctctgaaacgacgacttgtctctttgccag

Basic information

species Glycine max
transcript GLYMA17G35680.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193540256|gb|FK497364.1|FK497364
EST:     ACGTTGAGCCAAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: ACGTTGAGCC-AATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|208099674|gb|GD897929.1|GD897929
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|298198913|gb|HO042276.1|HO042276
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCACCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|208226250|gb|GE026767.1|GE026767
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|298194199|gb|HO040847.1|HO040847
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|193371286|gb|FK336883.1|FK336883
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|208194705|gb|GD989346.1|GD989346
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|208032854|gb|GD830485.1|GD830485
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|207822158|gb|GD793519.1|GD793519
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|208222277|gb|GE018181.1|GE018181
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|207691193|gb|GD673201.1|GD673201
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|208194168|gb|GD989873.1|GD989873
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|298186435|gb|HO037068.1|HO037068
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|298173492|gb|HO016828.1|HO016828
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|298167042|gb|HO010481.1|HO010481
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATCCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|208182871|gb|GD984845.1|GD984845
EST:     GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
EST: gi|207707285|gb|GD688127.1|GD688127
EST:     GACGTTGAGCCAATCGTTTCGTTAACCACGCAAATTCTCTACTCATCAAG                         GTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA
genomic: GACGTTGAGCCAATCGTTTCGTTAACCATGCAAATTCTCTACTCATCAAGgtattgtcag ... tctttgccagGTACATGAATGGGGAGATACTGACTATGGAGGATGAAAGAGCCGTGGTAGA